FMO06380.5prime Sequence
1118 bp (971 high quality bases) assembled on 2008-09-15
> FMO06380.5prime
CAGTCGACATGCCAAAGTGGGCACATCTCGGGCTAGCAGCTCTCCTTCTA
ATTTCCACCACCCAGGAGGGTACTGCAGATATCGATTGGTGGGAGAACGC
CTCGCTGTACCAGATATATCCGCGCTCCTTCCAGGACAGCGATGGCGATG
GCATCGGGGACCTGAAAGGCATTACTTCGAGATTGGGCTACCTCAAGGAA
ATAGGCATCACGGCCACCTGGCTGTCGCCCATTTTTACCTCGCCCATGTC
GGATTTCGGCTACGACATCTCTAACTTTTATGACATCGATCCGATTTTCG
GCACTCTCGAGGATTTCGATGACCTTATAGTGGAGGCCAAGTCGCTGGGC
GTTAAGATCATTCTCGACTTTGTACCCAACCACTCGAGTGACGAGAACGT
GTGGTTTGAAAAGTCCGTGAATCGCGAAGATGGCTACGACGACTTCTACG
TGTGGGACGATGGAAAACTGAATGAGGAAACTGGTGCAAGAGATCCTCCA
TCTAATTGGGTCAGTGTGTTCAGCGGACCCATGTGGACGTGGAACGAGAA
GCGCCAGCAGTACTTCCTGCACCAGTTTCAGGTGAAGCAGCCGGATCTAA
ACTTTACCAATCCAATGGTCAGGGAGCACATGCTGGATGTCTTGAAGTTT
TTGGCTGGACCGCGGAGTTGATGGATTTCGTATCGATGCAGTTCCACACA
TCTACGAGCACCGCAATGCAGACGGATCCTATCCGGATGAACCGGTTAGC
GGTTGGGGCAGTGACCCAACGCCTACGACTACCATGATCACATCTACACC
AAGGACCAGCCGGGCACGGTGGATCTCATGTACGATGGGCGTGAGTTTTT
GGACCACTATCGGGCGCAAAATGAAGCGATTCACGGTTCTCCTGGCCGAG
GCCTATTCTCCGTGGAGACACTAGTGCTTATTCGGAAACAGCACCCATCA
AGTACCAGCTGCCCATGACTTCAGTGATGTATCTCAGTGATACCTCCACC
GCCAAGGATGTTGTGGATCTATCGACTACTGGATGAATACCATGTGAAAG
ACCCCAACGGCCAATGGGTTGTTGGAAATCACAATCCAACCGAGGGCCGA
TGTATTGGGAGCCTCCCA
FMO06380.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A2-RA | 2036 | CG8694-RA | 18..1143 | 4..1112 | 4890 | 96.9 | Plus |
Mal-A6-RC | 1892 | CG30360-RC | 163..515 | 111..463 | 460 | 75.4 | Plus |
Mal-A6-RD | 2291 | CG30360-RD | 163..515 | 111..463 | 460 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8453644..8454701 | 4..1050 | 4460 | 97.2 | Plus |
2R | 25286936 | 2R | 8465320..8465672 | 111..463 | 460 | 75.4 | Plus |
2R | 25286936 | 2R | 8471170..8471538 | 455..87 | 360 | 73.2 | Minus |
2R | 25286936 | 2R | 8463133..8463335 | 189..391 | 250 | 74.9 | Plus |
2R | 25286936 | 2R | 8472103..8472452 | 111..460 | 235 | 71.1 | Plus |
2L | 23513712 | 2L | 11850478..11850615 | 111..248 | 195 | 76.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:45:30 has no hits.
FMO06380.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:29 Download gff for
FMO06380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A2-RA | 15..1147 | 1..1117 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:28 Download gff for
FMO06380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LvpD-RA | 10..1142 | 1..1117 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:31 Download gff for
FMO06380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A2-RA | 15..1147 | 1..1117 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:31 Download gff for
FMO06380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8453641..8454773 | 1..1117 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:29 Download gff for
FMO06380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4341146..4342278 | 1..1117 | 96 | | Plus |