FMO06381.5prime Sequence
531 bp (531 high quality bases) assembled on 2008-09-15
> FMO06381.5prime
CAGTCGACATGTCTGAACTTCAGTCATCTTTACTGTTAAAAAAACAATTG
GCAGAACTAAACAAGAATCCAGTGGAAGGATTCTCCGCTGGTTTAATTGA
TGAGAATGATATATTTCGCTGGGAAGTTTTAATAATTGGACCGCCAGATA
CACTGTACGAAGGAGGATTCTTTAAAGCTCATCTTTACTTTCCTAAAGAA
TATCCGTTGCGTCCTCCTCGAATGAAGTTTGTTACAGAAATTTGGCACCC
AAATATTGAGAAGAATGGAGATGTCTGTATTTCTATTTTACATGAGCCTG
GAGACGATAAATGGGGCTACGAAAAAGCATCGGAGCGCTGGTTACCCGTG
CATACAGTGGAGACTATCTTGATATCTGTAATATCAATGCTGGCCGATCC
GAACGATGAGTCTCCAGCAAACGTAGATGCTGCCAAGGAATGGCGAGAAT
CCTATACCGACTTTAAACGCAAAGTTGCTCGCTGCGTCAGAAAAAGTCAG
GAGGAGTGCTCGGCCAAGCTTTCTAGACCAT
FMO06381.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40045-RA | 740 | CG40045-RA | 164..667 | 9..512 | 2520 | 100 | Plus |
| CG40045-RD | 737 | CG40045-RD | 164..664 | 9..512 | 2465 | 99.4 | Plus |
| CG40045-RB | 868 | CG40045-RB | 336..795 | 53..512 | 2300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 24035432..24035786 | 158..512 | 1775 | 100 | Plus |
| 3L | 28110227 | 3L | 24030752..24030857 | 52..157 | 530 | 100 | Plus |
| 3R | 32079331 | 3R | 13717609..13717904 | 439..144 | 310 | 73.6 | Minus |
| 3L | 28110227 | 3L | 24028678..24028723 | 9..54 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:08:38 has no hits.
FMO06381.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:23 Download gff for
FMO06381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40045-RA | 158..673 | 1..519 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:29 Download gff for
FMO06381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40045-RA | 152..667 | 1..519 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:35 Download gff for
FMO06381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40045-RA | 158..673 | 1..519 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:35 Download gff for
FMO06381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 24035432..24035792 | 158..519 | 99 | | Plus |
| 3L | 24028672..24028723 | 1..54 | 92 | -> | Plus |
| 3L | 24030755..24030857 | 55..157 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:23 Download gff for
FMO06381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 24021772..24021823 | 1..54 | 92 | -> | Plus |
| arm_3L | 24023855..24023957 | 55..157 | 100 | -> | Plus |
| arm_3L | 24028532..24028892 | 158..519 | 99 | | Plus |
