FMO06382.5prime Sequence
1150 bp (980 high quality bases) assembled on 2008-09-15
> FMO06382.5prime
CAGTCGACATGAATCGAACTTCGCTGTCCAGTGGCAGCACCAGCCGCAGA
CTTCCGGCTCTCTTGTTTGTCCTGCTGCTCTGCCTGGTGGCCAGGACCAA
CGGTCGTCCTTCGCAAGAGGACGAGAGCGACTTGGCCATCATTCCGCCGG
ATGCCGACAATGTGGAGATCCATAAGGTTAAAATAGTGAACGGTGTCATG
CAAGAAGATCATCCGGTTATCATGTACAAGGAGGACTTCGTCAGCGAGGA
TTATGATCCAACAAAAAGCGAAACAAATCCTAGTCACCACAAGAAGCATA
AGCGGACGCGGCTCCATCATGCAAAGCAAGTAACTGGAACAGAAAAGAAG
GAGGACCAGATCCTTTTCGATATTCTGCCCGACAAGCCGATCGTCCTGGA
AGAGGACCTCAAGGCTCTCCCACACAGCAAAGTTGGGGCTGCCCAACTGG
CGGAACCCATCAAGGAAGAGTGGCTGGCTAAGCATCCCAAGAAGTACCAC
AGTCGCCAGCGACGACAGGCTCCTGTAAGCTTTGAGAAAGTCCTGCAATA
CTACTATGGCACTCCGGAAATAAAATTTGTGTCTCCCTTAACTTATACGC
ATTTTCGCATTTCAGTGAAGGGTAAGAAACCCCATCTGGTGGGGCCTCCG
AATCGTTAGGAATCAGGGCCAAAGAGAATATCCCAAACGCCAGACTCGGT
CGATTCTAGAGGAGAATTCGATTTAATACACAATTCAATCAAGCGGATGC
GGATTTCTCGATCTACAACCGTTCGTCTACGACTACTGCCAGGCCAATCT
TTCAAATCAATGATAGTGACTTGGTGACCTCGGCACCATCGTGGCGTCCG
TCGAACAGCATACGCCGGCCGCCCCCCACCCGCTCCCCCGTTGTGGGACT
TGCCCACCATGCGGCCCACGCAAGGCCTGTCCCACAACAGGGGGGGTCCG
ATAGTGAGCTCAGGTCAGCAGTGTGTGTGGGCGGATCGTCAACTGCTGCC
GGGCCGAAAGCAAGAGGTGCGGTACTACTTGCTTCAAGGATTCCGATGCA
TGAACCTTCTGGGAACTCATTCCGTGTGCCCATTGAGGCGGAAGCAAGGT
GCGTCTACACATGTCTGAAGCCGTCAACCAGCACAGCTTTCCATAACTTT
FMO06382.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hdly-RC | 2132 | CG5630-RC | 136..1233 | 9..1103 | 4845 | 97.1 | Plus |
| hdly-RA | 1386 | CG5630-RA | 136..1233 | 9..1103 | 4845 | 97.1 | Plus |
| hdly-RB | 1685 | CG5630-RB | 136..1228 | 9..1098 | 4820 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20926344..20926690 | 255..601 | 1735 | 100 | Plus |
| 3R | 32079331 | 3R | 20926757..20926975 | 602..822 | 910 | 98.2 | Plus |
| 3R | 32079331 | 3R | 20925944..20926102 | 9..167 | 795 | 100 | Plus |
| 3R | 32079331 | 3R | 20927187..20927394 | 824..1029 | 585 | 91.9 | Plus |
| 3R | 32079331 | 3R | 20926163..20926252 | 166..255 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:41:44 has no hits.
FMO06382.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:35 Download gff for
FMO06382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5630-RA | 130..1238 | 1..1110 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:11 Download gff for
FMO06382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5630-RA | 125..1233 | 1..1110 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:04 Download gff for
FMO06382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hdly-RA | 130..1238 | 1..1110 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:04 Download gff for
FMO06382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20926757..20926977 | 602..824 | 97 | -> | Plus |
| 3R | 20925938..20926102 | 1..167 | 97 | -> | Plus |
| 3R | 20926165..20926252 | 168..255 | 100 | -> | Plus |
| 3R | 20926345..20926690 | 256..601 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:35 Download gff for
FMO06382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16751660..16751824 | 1..167 | 97 | -> | Plus |
| arm_3R | 16751887..16751974 | 168..255 | 100 | -> | Plus |
| arm_3R | 16752067..16752412 | 256..601 | 100 | -> | Plus |
| arm_3R | 16752479..16752699 | 602..824 | 97 | -> | Plus |
