FMO06383.5prime Sequence
1134 bp (958 high quality bases) assembled on 2008-09-15
> FMO06383.5prime
CAGTCGACATGGACGATAGGAAGGCACTGATTACCCTCGATGGCGAATCA
AGCGCTGAGGATGATCCAATCATACTCCAAAAGGAGGCAGGTCCAACTTC
CAAAGCTGTGCAGGATTTCGGACTCCACCAAAGAGAAGAGCCCTCCACTA
GTGCTTTAGCTAGAAGAGCGACGCTTTCGGGGAATAACCACTTATTGGAT
GATTCTCAGCCACTGCTAATGGGCAACAATTCAGTGCCTCCCGATATTCC
AATTAATGGAAGTGCAGGCAGCCCGAATAGGAACATCAACAGCAGCGAAC
CCATTTTCCACCTCAGATCCCGAACAGCAGCCGCATCCACGCCCAATTAC
GAGAGCTTGGACTACGAAGTATGCGAGAACACGCTCTTCCAGGATGAGCA
GCGAAAGAGGCTGACAGAGCGATTCTCCCTGCGCAAGGACATCATAAGAT
GGATCATTTTTATACAGATTGGCATTATCACCGCACTGATAGCTTGCACC
ATAGATATTATAATCGAAGAGCTCTCGATACGAAAGTACACCTTCCTCTA
CAATTCTGTTAAGGAAAATGTACCCTTAAGCGATGCTTCCGATAGAGATC
TGCTGATTCCCTACCTTTACTGGCTCCTCTTCAGCATTGTGCCCGTGGCC
TTTGGAGCAGCCATGGTCACCTACATTGAGCCCATAACCCGCTGGCAGTG
GGATTCCACAGGTGAAGAGCTACCTGAACGGCGTCAAAATACCGCGTATT
GTAAGAATTAAAACGCTGGCTGTGAAGGCGATTGGAGTTATAACCTCGGT
GGGTGGGTGGTTTGGGCCGGAGGAAAGGAGGGTCCATGATACATGCTGGA
GCTGTCGTCGCCGCCAGATTTCGCAGGAAAAAGCACCACGTTTTTGAAGA
TTTCCGCATATTCAGGCTTTTCGGGATGATCACGAGAAAAGAGAATTTCG
TCCTGGAGGCGAACCGCGGAGTTTCAGCTGCTTTTGAAGCTCCAATTGAA
GCTGCTTTTTTCCTCTGGGAGAGCCGCTAGATCTGGGACCAGAATCTCCA
TTTGGCGCACTTAATGGCCCTCCTTATCGCGATATCCACTGGAATTCGAT
TTACCAGCTACATGCCTAACGATTCCCGTTCACG
FMO06383.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ClC-b-RA | 2647 | CG8594-RA | 71..1210 | 9..1134 | 4735 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12572982..12573428 | 556..998 | 1615 | 95.8 | Plus |
| 2R | 25286936 | 2R | 12572138..12572377 | 9..248 | 1200 | 100 | Plus |
| 2R | 25286936 | 2R | 12572688..12572891 | 352..555 | 1020 | 100 | Plus |
| 2R | 25286936 | 2R | 12572501..12572605 | 249..353 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:39:07 has no hits.
FMO06383.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:21 Download gff for
FMO06383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ClC-b-RA | 71..1151 | 9..1081 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:13 Download gff for
FMO06383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8594-RA | 27..1107 | 9..1081 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:39 Download gff for
FMO06383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ClC-b-RA | 71..1151 | 9..1081 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:39 Download gff for
FMO06383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12572690..12572891 | 354..555 | 100 | -> | Plus |
| 2R | 12572138..12572377 | 9..248 | 100 | -> | Plus |
| 2R | 12572501..12572605 | 249..353 | 100 | -> | Plus |
| 2R | 12572982..12573428 | 556..998 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:21 Download gff for
FMO06383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8459643..8459882 | 9..248 | 100 | -> | Plus |
| arm_2R | 8460006..8460110 | 249..353 | 100 | -> | Plus |
| arm_2R | 8460195..8460396 | 354..555 | 100 | -> | Plus |
| arm_2R | 8460487..8460933 | 556..998 | 96 | == | Plus |
