FMO06384.5prime Sequence
1082 bp (696 high quality bases) assembled on 2008-09-15
> FMO06384.5prime
AAAAAAACGAAGTTATCAGTCGACATGATTATCTTGTGGCTGATTCTGGC
CCTAAGTGCCCTGCTCTACTGGCTCCACAGAGCCAACAAGGATTACCACA
TCCTGTCCTTCTTCACCAAAAGAATTCGATTAAAGGATGGAACCCCTGTG
GAGATCATCGCTCCCATAGCCAAGGGAAAAACAATATTCGGCAACACCCT
TGACTTGTATGGGCGAGATCACGCTGGTGTTTTCAATTACTCGCGTGAGC
GTGCTAAGGAAATGGGTACTAGCTACATAGAATATGTCTTTGGAAAGGCG
ATTTACAACATTATCGATGCGGATAGCGCGGAAAATGTGCTGAATCATCC
GAATCTCATAACCAAGGGGCTCGTCTACAACTTCCTACATCCATTCCTAA
GGACGGGCTTGCTGACATCGACTGGCAAAAAATGGCATGCTCGCCGCAAG
ATGCTCACTCCGACATTCCATTTCAACATATTGAACCAGTTCCAGGAGAT
CTTTAAAACGGAGAGTCAAAAGTTCCTGCTACAATTTGAGGGTCAAGATG
AGGTAACCATAACGTTACACGATGTTATTCCAAGATTTACTCTAAACAGT
ATTTGTGAAACCGCCATGGGTGTTAAAGCTCGACGAGATGGCCGAGAAGG
GGGATCGATACCGGGAGAACTTCAGTCAGATTGAAAATGCTTCATTCGTC
GCTTGAGTAACCCACTTTTTATGGGGCGACAAGCTTTTCGAAATGTTTGC
TGCCAAGGATTTCGCTTCCGCACTCGATGTGGTTCATAGATTTTCAAGCG
AGATTATTGCCCAAAAGGAAGGACTTGCTAAGGATGACTGGACCAAAGTT
CAGCCCCGCTGATGATGATGGATTGTCTCAAAGAAGCGTTTCGCCATGCT
GGAACACCTATTTAGCTGAGAAGGATGGCCTCATCGATCACATTGGGATT
TGGAGAAGTGACCTCGATGTTCGAGGCTACGATCTACCTCATTGGCTCAT
TTTGGTCTCAAGACATGTCCCTAACCCAGAACAACCAAAGTATGTTATAA
GAGAATTCAAGACAATTAAAGGATGACCTGAA
FMO06384.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4p1-RA | 1680 | CG10842-RA | 42..1116 | 25..1081 | 4430 | 95.8 | Plus |
| Cyp4p3-RA | 1667 | CG10843-RA | 166..1056 | 150..1019 | 1140 | 76.9 | Plus |
| Cyp4p2-RA | 1777 | CG1944-RA | 363..693 | 341..672 | 300 | 73.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9240339..9240541 | 223..425 | 1015 | 100 | Plus |
| 2R | 25286936 | 2R | 9240082..9240280 | 25..223 | 995 | 100 | Plus |
| 2R | 25286936 | 2R | 9240908..9241173 | 607..871 | 935 | 95.9 | Plus |
| 2R | 25286936 | 2R | 9240737..9240842 | 502..607 | 515 | 99.1 | Plus |
| 2R | 25286936 | 2R | 9243216..9243401 | 626..811 | 475 | 86.1 | Plus |
| 2R | 25286936 | 2R | 9240603..9240685 | 424..506 | 415 | 100 | Plus |
| 2R | 25286936 | 2R | 9241235..9241316 | 873..952 | 270 | 91.5 | Plus |
| 2R | 25286936 | 2R | 9242900..9242978 | 427..505 | 200 | 83.5 | Plus |
| 2R | 25286936 | 2R | 9242640..9242785 | 223..368 | 190 | 75.3 | Plus |
| 2R | 25286936 | 2R | 9238097..9238172 | 430..505 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:42:02 has no hits.
FMO06384.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:41 Download gff for
FMO06384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4p1-RA | 42..973 | 25..952 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:14 Download gff for
FMO06384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4p1-RA | 40..971 | 25..952 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:16 Download gff for
FMO06384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4p1-RA | 42..973 | 25..952 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:16 Download gff for
FMO06384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9240604..9240685 | 425..506 | 100 | -> | Plus |
| 2R | 9240742..9240842 | 507..607 | 100 | -> | Plus |
| 2R | 9240909..9241173 | 608..871 | 95 | -> | Plus |
| 2R | 9241233..9241316 | 872..952 | 94 | == | Plus |
| 2R | 9240082..9240280 | 25..223 | 100 | -> | Plus |
| 2R | 9240340..9240540 | 224..424 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:41 Download gff for
FMO06384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5127587..5127785 | 25..223 | 100 | -> | Plus |
| arm_2R | 5127845..5128045 | 224..424 | 100 | -> | Plus |
| arm_2R | 5128109..5128190 | 425..506 | 100 | -> | Plus |
| arm_2R | 5128247..5128347 | 507..607 | 100 | -> | Plus |
| arm_2R | 5128414..5128678 | 608..871 | 95 | -> | Plus |
| arm_2R | 5128738..5128821 | 872..952 | 94 | == | Plus |
