FMO06386.5prime Sequence
420 bp (420 high quality bases) assembled on 2008-09-15
> FMO06386.5prime
ATAGAAAAGTGGCCTAACTGTGGCCGTGCGTGATGCGCAGGCCGCCGTCC
TGATGACTGCCACACGGCAAGGCCACACCATACGCGGCAAGCCGCCCGGC
GTGGCCCGTTCTCTGGAGCAGCGGATTCGTGAGGAGAACGTTGAGGATCC
GGAGGTGGTGGCCCGCATCAACATTGGCTTCCCGCAGCTGAAGGAGTCGC
GCTCGGCGCAGCTAAAGAAGCGACTGGAGCACCTGAAGTCCCAGCGCAGT
GACAAGCAGCTGGAGCAGCTGGCGCGGAGCAACAAGCTGATCATCGATTT
GGACAAGGTGCAGCGCACCTATGTGAAGACCACGGGCCAGCATGATCTTC
GCCTGGTGGCGGACCACTACGGCATCTTCGAGCACCTCTTTGGCAGCGCC
TACTTTGTGCCCCGCGTGCC
FMO06386.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL38-RA | 1399 | CG15871-RA | 75..491 | 4..420 | 2070 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14226561..14226717 | 131..287 | 785 | 100 | Plus |
| X | 23542271 | X | 14226784..14226916 | 288..420 | 665 | 100 | Plus |
| X | 23542271 | X | 14226363..14226490 | 4..131 | 625 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:50:38 has no hits.
FMO06386.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:18 Download gff for
FMO06386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL38-RA | 73..491 | 1..420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:33 Download gff for
FMO06386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL38-RA | 71..489 | 1..420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:41 Download gff for
FMO06386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL38-RA | 73..491 | 1..420 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:41 Download gff for
FMO06386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14226361..14226490 | 1..131 | 98 | -> | Plus |
| X | 14226562..14226717 | 132..287 | 100 | -> | Plus |
| X | 14226784..14226916 | 288..420 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:18 Download gff for
FMO06386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14120394..14120523 | 1..131 | 98 | -> | Plus |
| arm_X | 14120595..14120750 | 132..287 | 100 | -> | Plus |
| arm_X | 14120817..14120949 | 288..420 | 100 | | Plus |
