FMO06387.5prime Sequence
917 bp (-60 high quality bases) assembled on 2008-09-15
> FMO06387.5prime
AGAATGTTTTACATCAGTGATTGTTTTGTACGCGCTTATGTGTATCGCAT
TTTCCACAGCTTCGTTAAATGATATTCCCGAAATCACCCCCGCAATAGAT
AACAATTTATCTTTTCAATACGACGATACCTGCTGGACTCCTCCGAGGAT
TAAAAATGCTAAGGCATCCGTCAAACTTCGCCGAAATGGGGAACATGTCT
TTCTTGTGACCTATTATTCCTGCCGCGTCAACTACAAACTCAAACGTGCC
AAAGATAATGCACTCTATTGCTCAAATGGTATATGGCTTGGTTTGAAACC
CAATTGCATAAAGATTGGTAAAGGAAACACGCATTCAATGAAGCAAAAAA
AAATGAGATGCAGGATTGATAATGGTGGTTGCGCTCATATATGTAACAGA
TCAACTCATAAATGCGAATGCTATGAGGGTTATACACTGAATTCCACCGA
TTTAAAAAGCTGTAATGATATCGACGAGTGCAAGGAATCGAATGGCGGCT
GCTCTCAAGTTTGCAACACCTTCCTGGTGAATTCATATGCACCTGTAATA
GTGGTTTTGAAATAAACGAAAGTGATGAAAAAACTTGCTTGGACATTGAT
GAATGCGCTGATCCCGAACTATCGTGAGACTGTACGGCTGGATGTAAAAA
CCTAAAATGGAACATACAAATGCCTTCCGTCACTGGTGGGGCAAGTTGAG
CCCACTCGACGGCGATGGTTTTCTCCCCGGGTGAAAATAGTGTGGCAAGT
CCCGATTCAGCTGTCCGAAGATGGCAGTGAGTGTCAGGAATTTAACGAAT
GCGATTGGCGGATATTGATTCAACTCCTGGCCGAATGACTTACCCCGTAC
TGTGAGCACAATGCCTACATACCGGACAGTTCCCAATATCTGCCATTGGC
CCCAAAGATATCATCAA
FMO06387.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:51:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32373-RC | 1812 | CG32373-RC | 300..1200 | 11..915 | 3825 | 95.8 | Plus |
| CG32373-RB | 2066 | CG32373-RB | 554..1454 | 11..915 | 3825 | 95.8 | Plus |
| CG32373-RA | 1979 | CG32373-RA | 467..1367 | 11..915 | 3825 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:51:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7757288..7757587 | 56..355 | 1500 | 100 | Plus |
| 3L | 28110227 | 3L | 7758030..7758348 | 592..915 | 730 | 88 | Plus |
| 3L | 28110227 | 3L | 7757827..7757953 | 467..592 | 570 | 98.4 | Plus |
| 3L | 28110227 | 3L | 7757652..7757764 | 355..467 | 550 | 99.1 | Plus |
| 3L | 28110227 | 3L | 7757131..7757179 | 11..59 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:51:32 has no hits.
FMO06387.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:27 Download gff for
FMO06387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32373-RA | 458..1367 | 1..915 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:34 Download gff for
FMO06387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32373-RB | 510..1419 | 1..915 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:12 Download gff for
FMO06387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32373-RA | 458..1367 | 1..915 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:12 Download gff for
FMO06387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7757292..7757587 | 60..355 | 100 | -> | Plus |
| 3L | 7757122..7757179 | 1..59 | 94 | -> | Plus |
| 3L | 7757653..7757764 | 356..467 | 99 | -> | Plus |
| 3L | 7757828..7757953 | 468..592 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:27 Download gff for
FMO06387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7750222..7750279 | 1..59 | 94 | -> | Plus |
| arm_3L | 7750392..7750687 | 60..355 | 100 | -> | Plus |
| arm_3L | 7750753..7750864 | 356..467 | 99 | -> | Plus |
| arm_3L | 7750928..7751053 | 468..592 | 98 | -> | Plus |
