FMO06389.5prime Sequence
809 bp (807 high quality bases) assembled on 2008-09-15
> FMO06389.5prime
CAGTCGACATGGGCACTATCGAGAAACGCTCATTCTCCTTCCGGCTGCGT
CGATCCTTCGGCGACGGTGGTAGCACCAACAGCCGCAATAGCAACAACAA
CCGCAGCACCTGCACCAACCACAACAACCAGAAGCGATGCAGCACTCCGC
TGACGCCGACGAGCACCAGCACGGGTCGACTGGAGGTGCCTGGAGCGGCC
AGCGTGAGCCGCCGGAGCAGCATCTACAAGAAGCCGGACAAGAATGACGG
CGGACAGATCCATCTCATTCCGGACGTGGAGCTGCCGCTGATGACCTTCG
CCGACCAGTACAACATAGAGAAGACGCTGGCCGAGGGCTGTTTCGCCAAG
ATACTGCTGTGCCGGCATAAACCCACCAATACGCTGGTGGTGCTGAAGGC
GGTGCACGCCGAGCTGACCACGATCAAGGAGTTCCAGAAGGAGTTCCACT
ACAACTACGAGCTGTCGCATCACCATCACATACTGAGCGCATATGCGGTG
GCTTTCCAGACAATGGACTACTACGTGTTCGCCATGGAGCACGCCCCCTA
CGGCGATCTGGCCTCCAACATCGGACCCAACGGCCTGCACGAGAACGCCT
GCAAACTGATCTCGGAGCAGTTGAGCTCCGCCCTCGGCTTCATGCACTCC
AAGAATCTGGTGCATCGCGACCTGAAGATCGAAAATATCCTGTCTTCACG
CCGGACTTTACGCGCGTGAAGCTGTGCGACTTTTGGGGCCACCACAAAAA
AAGGTCTGCTTGGTGCACCAAGTTGAACCACACGTTGTACAGCTGCGTGC
CGCCCGGAG
FMO06389.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11221-RB | 2722 | CG11221-RB | 516..1309 | 9..804 | 3735 | 98.2 | Plus |
| CG11221-RA | 1979 | CG11221-RA | 516..1309 | 9..804 | 3735 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6753939..6754720 | 21..804 | 3575 | 98.2 | Plus |
Blast to na_te.dros performed 2014-11-28 22:31:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2287..2373 | 40..128 | 206 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2442 | 70..143 | 190 | 73 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2446..2522 | 72..145 | 152 | 70.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2398..2467 | 72..144 | 150 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2794..2880 | 72..156 | 132 | 65.9 | Plus |
| Doc2-element | 4789 | Doc2-element DOC2 4789bp | 550..611 | 92..153 | 130 | 67.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1519..1599 | 90..168 | 129 | 67.1 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 516..567 | 77..128 | 125 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2961..3031 | 77..144 | 114 | 64.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1128..1179 | 72..127 | 108 | 71.4 | Plus |
FMO06389.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:00 Download gff for
FMO06389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11221-RA | 508..1241 | 1..733 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:37 Download gff for
FMO06389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11221-RA | 502..1235 | 1..733 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:04 Download gff for
FMO06389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11221-RA | 508..1241 | 1..733 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:04 Download gff for
FMO06389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6753940..6754652 | 22..733 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:00 Download gff for
FMO06389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6753940..6754652 | 22..733 | 99 | == | Plus |
