Clone FMO06391 Report

Search the DGRC for FMO06391

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:63
Well:91
Vector:pMK33-CFH-BD
Associated Gene/Transcriptpon-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06391.5prime Sequence

1112 bp (1018 high quality bases) assembled on 2008-09-15

> FMO06391.5prime
CAGTCGACATGCTGGAGACGAAGAGCATAGCTGCATTGGCTTTCACGGAG
ACGCCGCGCAAACGCAAAAGGGAGACGCTCTATAAAAATGCTGCCCCGCC
CCCGAATCCGCAGCAACAACCCCCAGAAAAGGACGCACAGGATGCAGCTG
TCGCGTCGACAGAATCCTGCTTCACCAACGCCGCCTTCAGTTCCACGCCC
AAGAAGCTAATGGTGGCTCGTCGTCGTTTGGCCAAGGAGAATAGCCAACC
CAATCCGTTTCCCGGCTTGGAGGTCAAGTCCATAGCTGATCTGGCCCAGA
AGCAGCAGCACCAGCAGCATCATCAGCAGCAGCAACAACAACAACAAAAG
CTACCCACGAATCCTTTTGAGGTCCTGCGCCAGCCGCCCAAGAAGAAGAA
GCGCGAGCATGCCTGCTTCGAGAATCCTGGCCTGAATTTGGAGCTGCCCG
AGAAGCAGTTCAATCCATATGAGGTCGTCCGCTCGGCAACCACGCCCGCC
AAGGGCTTCGTGAATCCTGCCCTGAATTTGCGCGGCAGTGATGCGCCGGC
CTCGCTCAATCCCTTCGAGATCCATCGGCCCAGCGAGGCGTCCGAGGCAG
CCTGCAATCCCTCGGGTGTGGCCAATCCGGCACTGGCCGATAGGGATTCG
GAGGAGCAGCTGCCCACCAGCCTGAAGATCGGCTTGCCATTCACGCCAAC
GCTGGGCTGTCGCATCGATTTTCACGGCATGTCCCTTACGCAGCTAACGC
CTAGCAAGCTGCTGGCCGAGAAGCTGGTCTTTTCGCCCGTTCCCGGCGCC
CAAACGATCGCTGGGCGCCATCAGCGAGGAGTCGTCTATGGACATTGGCA
AGGAGCTGGATCGCTATCACTGGAATTGGAGAACAGCATCAACGAGGCGA
AGCTACGAGGATGGCGTGCTGTGGATAGAGAGTTGCCCAGGAATAGCTTG
AGGTGAACTGCCCAGAACACAAGTCTCCTTGGTCATGAGACCAATACGCA
GAGCTGATGATGCAGAATGGTGACGTGGACACTCAGTGGAGAGGCGTCTG
TTGCACCAGACGAGCCACCTACCGAAATTACGAGGCTCCGAGGGGGAAAG
GACACGAAAACT

FMO06391.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
pon-RA 2601 CG3346-RA 136..1254 9..1106 4970 97.5 Plus
Cht6-RK 11742 CG43374-RK 135..180 301..346 185 93.5 Plus
Cht6-RJ 14423 CG43374-RJ 79..124 301..346 185 93.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4636453..4636919 9..475 2335 100 Plus
X 23542271 X 4637110..4637717 472..1063 2240 96.6 Plus
X 23542271 X 10017616..10017661 301..346 185 93.5 Plus
3L 28110227 3L 14027758..14027809 347..296 185 90.4 Minus
3L 28110227 3L 14751472..14751523 352..301 185 90.4 Minus
Blast to na_te.dros performed 2014-11-28 22:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2364..2436 280..351 209 78.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2355..2409 297..351 185 81.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2783..2835 302..354 184 83 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2302..2355 298..351 162 77.8 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3279..3323 303..347 144 80 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2434..2476 304..346 143 81.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2943..2997 303..354 133 74.5 Plus

FMO06391.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:13 Download gff for FMO06391.5prime
Subject Subject Range Query Range Percent Splice Strand
pon-RA 136..1225 9..1080 97   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:40 Download gff for FMO06391.5prime
Subject Subject Range Query Range Percent Splice Strand
pon-RA 124..1213 9..1080 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:38 Download gff for FMO06391.5prime
Subject Subject Range Query Range Percent Splice Strand
pon-RA 136..1225 9..1080 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:38 Download gff for FMO06391.5prime
Subject Subject Range Query Range Percent Splice Strand
X 4636453..4636917 9..473 100 -> Plus
X 4637112..4637736 474..1080 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:13 Download gff for FMO06391.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4530486..4530950 9..473 100 -> Plus
arm_X 4531145..4531769 474..1080 96   Plus