FMO06391.5prime Sequence
1112 bp (1018 high quality bases) assembled on 2008-09-15
> FMO06391.5prime
CAGTCGACATGCTGGAGACGAAGAGCATAGCTGCATTGGCTTTCACGGAG
ACGCCGCGCAAACGCAAAAGGGAGACGCTCTATAAAAATGCTGCCCCGCC
CCCGAATCCGCAGCAACAACCCCCAGAAAAGGACGCACAGGATGCAGCTG
TCGCGTCGACAGAATCCTGCTTCACCAACGCCGCCTTCAGTTCCACGCCC
AAGAAGCTAATGGTGGCTCGTCGTCGTTTGGCCAAGGAGAATAGCCAACC
CAATCCGTTTCCCGGCTTGGAGGTCAAGTCCATAGCTGATCTGGCCCAGA
AGCAGCAGCACCAGCAGCATCATCAGCAGCAGCAACAACAACAACAAAAG
CTACCCACGAATCCTTTTGAGGTCCTGCGCCAGCCGCCCAAGAAGAAGAA
GCGCGAGCATGCCTGCTTCGAGAATCCTGGCCTGAATTTGGAGCTGCCCG
AGAAGCAGTTCAATCCATATGAGGTCGTCCGCTCGGCAACCACGCCCGCC
AAGGGCTTCGTGAATCCTGCCCTGAATTTGCGCGGCAGTGATGCGCCGGC
CTCGCTCAATCCCTTCGAGATCCATCGGCCCAGCGAGGCGTCCGAGGCAG
CCTGCAATCCCTCGGGTGTGGCCAATCCGGCACTGGCCGATAGGGATTCG
GAGGAGCAGCTGCCCACCAGCCTGAAGATCGGCTTGCCATTCACGCCAAC
GCTGGGCTGTCGCATCGATTTTCACGGCATGTCCCTTACGCAGCTAACGC
CTAGCAAGCTGCTGGCCGAGAAGCTGGTCTTTTCGCCCGTTCCCGGCGCC
CAAACGATCGCTGGGCGCCATCAGCGAGGAGTCGTCTATGGACATTGGCA
AGGAGCTGGATCGCTATCACTGGAATTGGAGAACAGCATCAACGAGGCGA
AGCTACGAGGATGGCGTGCTGTGGATAGAGAGTTGCCCAGGAATAGCTTG
AGGTGAACTGCCCAGAACACAAGTCTCCTTGGTCATGAGACCAATACGCA
GAGCTGATGATGCAGAATGGTGACGTGGACACTCAGTGGAGAGGCGTCTG
TTGCACCAGACGAGCCACCTACCGAAATTACGAGGCTCCGAGGGGGAAAG
GACACGAAAACT
FMO06391.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pon-RA | 2601 | CG3346-RA | 136..1254 | 9..1106 | 4970 | 97.5 | Plus |
Cht6-RK | 11742 | CG43374-RK | 135..180 | 301..346 | 185 | 93.5 | Plus |
Cht6-RJ | 14423 | CG43374-RJ | 79..124 | 301..346 | 185 | 93.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4636453..4636919 | 9..475 | 2335 | 100 | Plus |
X | 23542271 | X | 4637110..4637717 | 472..1063 | 2240 | 96.6 | Plus |
X | 23542271 | X | 10017616..10017661 | 301..346 | 185 | 93.5 | Plus |
3L | 28110227 | 3L | 14027758..14027809 | 347..296 | 185 | 90.4 | Minus |
3L | 28110227 | 3L | 14751472..14751523 | 352..301 | 185 | 90.4 | Minus |
Blast to na_te.dros performed 2014-11-28 22:05:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2436 | 280..351 | 209 | 78.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2409 | 297..351 | 185 | 81.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2783..2835 | 302..354 | 184 | 83 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2355 | 298..351 | 162 | 77.8 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3279..3323 | 303..347 | 144 | 80 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2434..2476 | 304..346 | 143 | 81.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2943..2997 | 303..354 | 133 | 74.5 | Plus |
FMO06391.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:13 Download gff for
FMO06391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pon-RA | 136..1225 | 9..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:40 Download gff for
FMO06391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pon-RA | 124..1213 | 9..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:38 Download gff for
FMO06391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pon-RA | 136..1225 | 9..1080 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:38 Download gff for
FMO06391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4636453..4636917 | 9..473 | 100 | -> | Plus |
X | 4637112..4637736 | 474..1080 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:13 Download gff for
FMO06391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4530486..4530950 | 9..473 | 100 | -> | Plus |
arm_X | 4531145..4531769 | 474..1080 | 96 | | Plus |