FMO06392.5prime Sequence
519 bp (519 high quality bases) assembled on 2008-09-15
> FMO06392.5prime
CAGTCGACATGCCTATCATGTACAACACGGGGGAGTGGTTCAAGGTGCGA
CCGGACTACTACAGAAAAGTGGAACTGGCTACGCCTGATTGGCCTCTGGA
CCTGGACTTGGAGTATATGTGGGTGGAAGTGGCTCCCTATGGAGGACCAC
TGGCGGTCACTCGTGATCCGACCAAATTGGTGCCGGTAAAGGGTAACGCT
AGACCCATGATTCGCATCTTTGATACCACCGGCAGGGAAATGGGTCACAT
ATTGTGGAACCATGGCAAACTTATTGCCATGGGCTGGTCAGACATGGAGG
AGCTTATCTGCATCCAGGAGAACGCCACCGTCTTTGTCTACGACATGTTT
GGTCGGGAAAAGGAGTCCTACAGCATCGGCGATGAGGCCAGTGTCACAAA
GATTGTGGAGGGCAAGGTGTTCCAGTCCTCAGCTGGCACAGGAGTGGCTG
TAATGACCACATCCGGTCGGGTTTTCCTCAAGCAGAACAGCAGCAAGACT
GAAAAGAAAGCTGCCGGAT
FMO06392.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps16A-RA | 2741 | CG8454-RA | 102..613 | 7..519 | 2540 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9267488..9267752 | 254..519 | 1280 | 99.6 | Plus |
| 3R | 32079331 | 3R | 9267243..9267436 | 61..254 | 970 | 100 | Plus |
| 3R | 32079331 | 3R | 9267120..9267177 | 7..64 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:50:41 has no hits.
FMO06392.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:20 Download gff for
FMO06392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps16A-RA | 96..613 | 1..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:42 Download gff for
FMO06392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps16A-RA | 83..600 | 1..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:44 Download gff for
FMO06392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps16A-RA | 96..613 | 1..519 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:44 Download gff for
FMO06392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9267114..9267177 | 1..64 | 96 | -> | Plus |
| 3R | 9267247..9267436 | 65..254 | 100 | -> | Plus |
| 3R | 9267489..9267752 | 255..519 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:20 Download gff for
FMO06392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5092836..5092899 | 1..64 | 96 | -> | Plus |
| arm_3R | 5092969..5093158 | 65..254 | 100 | -> | Plus |
| arm_3R | 5093211..5093474 | 255..519 | 99 | | Plus |
