FMO06395.5prime Sequence
736 bp (-60 high quality bases) assembled on 2008-09-15
> FMO06395.5prime
ATACCAAGTTATCAGTCGACATGCCGATCAACTTTAATATTGGCTTGCTG
GGACATGTTGACAGTGGCAAGACCACCTTGGCCAAGGCTTTAAGTTCGAT
TTCCAGCACGGCCGCCTTCGACAAGAATCCGCAATCAGTGGAGCGAGGCA
TAACTTTGGATTTGGGCTTTAGTGGACTTTTGGTGGATGCTCCTGCGCAC
TTACCTCAAGGAGAACAGCTCCAGTTCACCTTTGTCGACTGCCCCGGCCA
TGCAAGTCTTATACGCACTATTATAGGAGGTGCCCAGATCATTGATCTCA
TGCTCCTGGTGGTGGACGCCCAAAATGGCAAACAAACCCAAACAGCAAAA
TGCCTCATTATCGGGGAGCTGCAGCAAAAAAAGCTGATTGTATTGATCAA
CAAAATAAATGTTTATCCAGAAAATCAGAGGGCGTCCAAGCTGGAGAAGC
TACGCTTGCGGCTCGCAAAAACTTTGGAAGCCACCACATTCGGTGGTCAA
GTGCCCATATGTGCTGTGTCTGCTTTGCAAGGAACACATATCGCGGAGTT
GCGAGAAGTACTTAGAGAAGCCTACTTTCAGCCGCAGAGAAACCTAGCCG
ATCCACTCTTCATGTACGTTGATCATTGCTTCGGAATAAAGGGCCAGGGA
ACCGTTTGCACTGGCACTCTGCTCCAGGGAAAGGTTCAAGTATAACAATG
TGATTGAGCTGCCTGCTCTTTGTGGAGCAAAGGAAA
FMO06395.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EfSec-RA | 1613 | CG9841-RA | 71..784 | 21..736 | 3395 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21385381..21385837 | 736..278 | 2060 | 97.6 | Minus |
| 2R | 25286936 | 2R | 21385891..21386151 | 281..21 | 1305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:42:39 has no hits.
FMO06395.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:55 Download gff for
FMO06395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EfSec-RA | 61..781 | 12..733 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:32 Download gff for
FMO06395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EfSec-RA | 55..775 | 12..733 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:36 Download gff for
FMO06395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EfSec-RA | 61..781 | 12..733 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:36 Download gff for
FMO06395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21385384..21385835 | 280..733 | 97 | <- | Minus |
| 2R | 21385893..21386161 | 12..279 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:55 Download gff for
FMO06395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17272889..17273340 | 280..733 | 97 | <- | Minus |
| arm_2R | 17273398..17273666 | 12..279 | 98 | | Minus |
