FMO06404.5prime Sequence
874 bp (874 high quality bases) assembled on 2008-09-15
> FMO06404.5prime
CAGTCGACATGCATTTCTTCATTGTGCCGTGCCTCCTAGGACTTGCAGCC
GGCATTCCTCAAGGATACAACTACCAAGCCCAGCAACAGCTTCAATCGTC
GGCGCAAGCTGGTCAACTCCATCTGCCTTCTATTCCGCAGTTTGCCACCC
TTGCGGAGCAGACGATCCTTCAGCAGGCACTCCAGGCTCCAAAGTTGCAG
CAGGTCCTGACCGGAGGAGAAGGGCTCGCATCTTACTCAAATCAAAACCA
GGCCTCCGCTTACCAACAGCAGGCGACGCAGTTCGGCCCAAATTCGGCGT
ACAATGCGCTGCCCCAGGCACATCAGCCTCAGCAGCAGCACCTCGTCTCC
AAGGACATCTACGTCCATGTGCCACCAGCAGAAGAGCCCGAGGACCGCTA
CCCTCAGCCCGTCCTTCCGCCCGCGCCTCCGCGCAAGCATTATCGCATAG
TTTTCATCAAGGCACCGACGACCAGTGTCTCGAAGGCGGCGTTGCGCATC
AAACAGGCTCCTGTGGAGGAGAAGACCATCATCTATGTGCTGACCAAGAA
GCCGGACCCACTAGATCTCCAGACTGCCATCGAGGAAATCGCGCCGAAGC
AGCCCAGCAAGCCAGAGGTATTTTTCATCAAATACAAGACCCAGGAGGAA
GCTGCGCATGCGCAACGTACCATTCAAGCTCAATATGACCAGCTTGGCGG
AACATCACAGGTTTCTGACGAGGGAGTTGCACCCGTTACATCCGTGATTG
GCGTACTGGACAACCAGCGCAACAACGGAATTTCATCCGGACAGTTTTCT
GGCTCCTTGCCAAACAGCTACTTGCCAACTAATCTGCGTGCTGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCG
FMO06404.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlG-RC | 2165 | CG14643-RC | 1201..2034 | 9..842 | 4170 | 100 | Plus |
| TwdlG-RB | 1013 | CG14643-RB | 49..882 | 9..842 | 4170 | 100 | Plus |
| TwdlG-RA | 1620 | CG14643-RA | 656..1489 | 9..842 | 4170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4249191..4249845 | 678..24 | 3275 | 100 | Minus |
| 3R | 32079331 | 3R | 4248854..4249019 | 842..677 | 830 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:52:52 has no hits.
FMO06404.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:45 Download gff for
FMO06404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlG-RA | 647..1489 | 1..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:57:13 Download gff for
FMO06404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlG-RA | 647..1489 | 1..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:43:11 Download gff for
FMO06404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlG-RA | 647..1489 | 1..842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:43:11 Download gff for
FMO06404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4248854..4249017 | 679..842 | 100 | <- | Minus |
| 3R | 4249191..4249845 | 24..678 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:45 Download gff for
FMO06404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 74576..74739 | 679..842 | 100 | <- | Minus |
| arm_3R | 74913..75567 | 24..678 | 100 | <- | Minus |
