FMO06405.5prime Sequence
1081 bp (967 high quality bases) assembled on 2008-09-15
> FMO06405.5prime
CAGTCGACATGAAGCTCTCTGACACCATGGCCACGCCTATAGAAGAAAAA
CTCGACCAAAACCTGAAGGTGCGAACTGGAATGGTGCACGTGAGCGATGG
CAAGAGCAGACCAGAACCGCTTCGACTTAATCTTACCATGGAGTTGCTTT
CGCTGCAGAAGCTGGAAGTGGTAACACCAAGTAGTTGTCACCCCAATGGA
CCACCCATGGAATCAAAGGAACGTATGGTTCAAATTACGCGCCAAAAACA
AGGCGGCCTAGGACTGAGCATAAAAGGTGGCGCCGAGCATAAACTACCCA
TTTTGATATCGCGTATCTATAAGGATCAGGCTGCGGACATAACGGGCCAA
CTATTTGTTGGCGATGCCATCATCAAGGTCAACGGAGAATACATCACGGC
ATGTCCTCACGATGATGCCGTCAATATATTGAGAAACGCTGGCGATATTG
TTGTGCTCACTGTTAAGCATTATCGCGCAGCCACGCCTTTCCTTCAGAAA
CAACTGACCAAGGACACACCCGACTCGGACAACGATGTCACATGTGCCGA
ACTGAAGGCTGACGAGGGCTACAAGTCATCCGTCAATAGTGGAACCATCA
GTCGCAGTTGTAGTCGCCCCATGTCAATTTGCTCGGAGCCCGAGAAGCGC
TGGACCGACGTGGTTGCCGTACCTCTAATGATGGCATATGTGACGAGGTA
CATCTATGGCACCGACAAGCTGCGACAAATGCCTTCGAAGTTCGCGGTCT
GAATGGAATTTCCACAGGTGTCATACACTGTGACGAACTGGCATACTTAG
TCAGTGGCTGAATTGATAACAGACATGTTGTGGGCCTGACGCATTTACAG
ATGAAGCTATATAATAGAAACTTTGCTGTGGGCGAGCGCATTGATACATG
GGCTGGTGATGATGTGTCATAACAACAATATATCGTGCCGAGCTTCAGCC
CAGGTTTCTACTGCTCAAAGCATGAGGATGCTCTTTGAACCCACCACAAT
GTGGCTTGCATTATATGGCTTTGGTGTCTAAAAGTCAACAAACATGTTTC
CGCTTTGTCAGGAATCGAAACCTGGGATGCG
FMO06405.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syn2-RE | 1888 | CG4905-RE | 47..1129 | 9..1067 | 4645 | 96.8 | Plus |
| Syn2-RB | 3475 | CG4905-RB | 174..1256 | 9..1067 | 4645 | 96.8 | Plus |
| Syn2-RA | 3671 | CG4905-RA | 370..1452 | 9..1067 | 4645 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16554966..16555253 | 217..504 | 1440 | 100 | Plus |
| 2R | 25286936 | 2R | 16555319..16555483 | 505..669 | 825 | 100 | Plus |
| 2R | 25286936 | 2R | 16554757..16554909 | 67..219 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 16555599..16555789 | 664..850 | 740 | 97.4 | Plus |
| 2R | 25286936 | 2R | 16554633..16554694 | 9..70 | 310 | 100 | Plus |
| 2R | 25286936 | 2R | 16555843..16555971 | 849..970 | 255 | 90.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:52:55 has no hits.
FMO06405.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:47 Download gff for
FMO06405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syn2-RA | 370..1393 | 9..1013 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:57:15 Download gff for
FMO06405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syn2-RE | 43..1066 | 9..1013 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:43:13 Download gff for
FMO06405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syn2-RA | 370..1393 | 9..1013 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:43:13 Download gff for
FMO06405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16554633..16554692 | 9..68 | 100 | -> | Plus |
| 2R | 16554759..16554908 | 69..218 | 100 | -> | Plus |
| 2R | 16554968..16555253 | 219..504 | 100 | -> | Plus |
| 2R | 16555319..16555483 | 505..669 | 100 | -> | Plus |
| 2R | 16555605..16555789 | 670..850 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:47 Download gff for
FMO06405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12442138..12442197 | 9..68 | 100 | -> | Plus |
| arm_2R | 12442264..12442413 | 69..218 | 100 | -> | Plus |
| arm_2R | 12442473..12442758 | 219..504 | 100 | -> | Plus |
| arm_2R | 12442824..12442988 | 505..669 | 100 | -> | Plus |
| arm_2R | 12443110..12443294 | 670..850 | 97 | -> | Plus |
