FMO06407.5prime Sequence
1101 bp (1025 high quality bases) assembled on 2008-09-15
> FMO06407.5prime
CAGTCGACATGCACCGCACGCAGCCGTCGCTGCCGCTGCCTCTGCCGCTG
CTGGCGTTGGCGTTGGCGTTGGCTTCGGCGCTGGCTTTTGCGCAGGCGCA
GAATATAGATGCCGGTTGCAGTTTCCCGGGATCGCCGGCGCACAGCAGCG
TCGTCTTCTCGAATGCGAATCTCACCCAGGGCACGGTGGCCTCCTACAGC
TGCGAGCGGGGATTCGAGCTTCTGGGACCGGCGCGGCGTGTCTGCGACAA
GGGGCAATGGGTGCCCGAGGGCATTCCGTTCTGCGTTTTGAACGTTGCCG
CTGGCAAGGCGCCCATGCAGATTTCCACTGATGGCGCTGGTGCTCCACAA
AAGGCCATCGATGGCTCCACATCCGCCTTCTTCACACCGGAGACCTGCTC
GCTGACGAAGGCGGAGCGATCGCCCTGGTGGTATGTGAATCTCCTGGAAC
CCTACATGGTGCAACTGGTGCGTCTGGACTTTGGCAAATCCTGTTGCGGC
AATAAGCCCGCCACAATTGTAGTGCGAGTGGGCAACAACCGACCGGACTT
GGGCACAAATCCGATCTGCAACCGCTTCACGGGCCTCCTGGAGGCCGGAC
AGCCGCTCTTCCTGCCCTGCAATCCCCCGATGCCGGGAGCCTTCGTGAGT
GTCCACCTGGAGAATAGCACACCCAATCCGCTGTCCATTTGCGAGGCGTT
CGTCTACACGGACCAAGCGCTGCCCATCGAGCGGTGTCCCACCTTCCGCG
ATCAGCCGCCTGGAGCTCTGGCCTCGTACAATGGCAAGTGCTACATCTTC
TACAACCGCCAGCCGCTGAACTTTTTGGACGCACTGTCCTTCTGTCGATC
CCGTGGCCGGTACGCTGATCAGTGAGAGCAATCCGGCGCTGCAGGGATTC
ATCAGTGGGGAGCTGTGGCGGCGTCATCGCAGTGACGTCAGTTCCGCATT
ACTGGGATGGGAGCGGTACTTGATGCCAGCGACGCACCACCTGGAAATGG
GTGAACGTGGACCAGCTGACCGTCTCTTTCTGGATCATCCCGGCTGCCAA
GAGGATTGTGCCCGATTTAATGCTCAAAGGCTGGGCTTCTGGAACGATCC
T
FMO06407.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9095-RC | 4791 | CG9095-RC | 572..1660 | 9..1098 | 5005 | 97.7 | Plus |
| CG9095-RD | 4809 | CG9095-RD | 572..1660 | 9..1098 | 5005 | 97.7 | Plus |
| CG9095-RB | 5349 | CG9095-RB | 572..1660 | 9..1098 | 5005 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15145882..15146455 | 1072..498 | 2425 | 96.7 | Minus |
| X | 23542271 | X | 15148068..15148282 | 499..285 | 1075 | 100 | Minus |
| X | 23542271 | X | 15150692..15150870 | 285..107 | 895 | 100 | Minus |
| X | 23542271 | X | 15162555..15162654 | 108..9 | 500 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:05:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsub\GEM | 1730 | Dsub\GEM GEM 1730bp | 144..171 | 52..25 | 113 | 89.3 | Minus |
FMO06407.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:16 Download gff for
FMO06407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9095-RB | 564..1650 | 1..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:07 Download gff for
FMO06407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9095-RB | 561..1647 | 1..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:22 Download gff for
FMO06407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9095-RB | 564..1650 | 1..1087 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:22 Download gff for
FMO06407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15145882..15146454 | 499..1072 | 96 | <- | Minus |
| X | 15148069..15148281 | 286..498 | 100 | <- | Minus |
| X | 15150692..15150868 | 109..285 | 100 | <- | Minus |
| X | 15162555..15162662 | 1..108 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:16 Download gff for
FMO06407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15039915..15040487 | 499..1072 | 96 | <- | Minus |
| arm_X | 15042102..15042314 | 286..498 | 100 | <- | Minus |
| arm_X | 15044725..15044901 | 109..285 | 100 | <- | Minus |
| arm_X | 15056588..15056695 | 1..108 | 97 | | Minus |
