FMO06408.5prime Sequence
1155 bp (1022 high quality bases) assembled on 2008-09-15
> FMO06408.5prime
CAGTCGACATGAGCAGGGGTCGCGGAAAGGTCAGGGATTCAGCAAGCCAT
TCCGGCTCCCACTCCGCATCCAAATCGGCCATGGACCCGCCGCGCTGCTC
CATCTGCGGCACTCAGCAGCAACTACTGCGCTGCGCCAAGTGCAAGGCCG
TCTACTACTGCTCCCCCGCCCACCAGCATCTCCATTGGCCCGACCACCGC
ACCGAGTGCCGCCTCCTGACCCGCCAAAAGCTCAACAGCAGCAACAACAA
TAAGCAGCAGCAGCGGCAGCAGATCCAGCAACTGCAACAAGCTGTGGCAT
CTGCCAATCTGGAATGCAGCGGCGCCGGCGCCAACTGCTCCACCGCCCAG
ATGATGACGCCTGCCCACCAGGCGCAGAGTTGGCCCGCCGAGGTAGACAA
CCTGCTGAATCTCCTCGGGCAGCCGGGCAGCCAGGAGAAGGCTGCAGCTG
CGGAAACGGAAACAGGTCAAAGGCAGCAGCAGCACCAGCATCATCACCAT
AATGGCGAAAAGAGCTCCAGCTATCAAATCGGTCTGGCGGATGCCAGCTT
CATGGGATCAGGAAGTGAGCGCCGCTATGAGGATCTGTGCCGTAACATCA
TCAGCGACATGAACCAGTATGGTCTGTCCGTGGTGGACGACTTCCTGGGG
ATGGAGACGGGCCTGAAGATCCTCAACGAGGTTCGAAGCATGTACAACGC
AGGAGCCTTCCAGGATGGCCAAGTGGTGACCAACCAGACGCCCGATGCAC
CCGCGGTGCGCGGTGACAAGATCCGAGGCGATAAGATCAAGTGGGTTGGT
GGCAATGAGCCGGGCTGCAGCAATGTCTGGTATCTGACCAATCAGATTGA
CTCTGTGGTGTATCGTGTTAACACGATGAAAGATAATGGGCATCTTGGGC
AACTACCACATCAGGAAGCGCACGAGGGAATGGGTCGCTTGTTATCCGGG
ATCGGGAACTCACTACGTCATGCATGGTGGACAATCCCAAAAGGATGGCC
GCGTTTAACGGCCCTATACTACCTGGAATATCAACTGTGGATGCGCGGGA
AGTGGCCGCATCTGGCGAATCCGGCCAACACACCGGACACAGTGGCGAAT
TGGGGCCCAAGTTTGGATCGCCTTGAAATTCTTGGCGGAACTTCGAATTC
CCACA
FMO06408.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hph-RD | 3171 | CG44015-RD | 529..1652 | 9..1133 | 5115 | 97.7 | Plus |
Hph-RC | 2496 | CG44015-RC | 529..1652 | 9..1133 | 5115 | 97.7 | Plus |
Hph-RA | 2337 | CG44015-RA | 699..1266 | 565..1133 | 2335 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5257565..5258121 | 9..565 | 2785 | 100 | Plus |
3R | 32079331 | 3R | 5266751..5267032 | 564..845 | 1410 | 100 | Plus |
3R | 32079331 | 3R | 5267117..5267202 | 842..928 | 355 | 96.6 | Plus |
3R | 32079331 | 3R | 5267268..5267385 | 933..1051 | 340 | 95 | Plus |
Blast to na_te.dros performed 2014-11-28 19:49:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2662 | 233..502 | 141 | 56.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2377 | 445..502 | 132 | 72.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2380 | 442..499 | 132 | 72.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2296..2352 | 463..521 | 110 | 67.8 | Plus |
FMO06408.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:50 Download gff for
FMO06408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RC | 529..1617 | 9..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:55:06 Download gff for
FMO06408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RC | 525..1613 | 9..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:15 Download gff for
FMO06408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RC | 529..1617 | 9..1097 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:15 Download gff for
FMO06408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5257565..5258121 | 9..565 | 100 | -> | Plus |
3R | 5266753..5267032 | 566..845 | 100 | -> | Plus |
3R | 5267121..5267201 | 846..927 | 96 | -> | Plus |
3R | 5267263..5267402 | 928..1067 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:50 Download gff for
FMO06408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1092985..1093124 | 928..1067 | 91 | | Plus |
arm_3R | 1083287..1083843 | 9..565 | 100 | -> | Plus |
arm_3R | 1092475..1092754 | 566..845 | 100 | -> | Plus |
arm_3R | 1092843..1092923 | 846..927 | 96 | -> | Plus |