Clone FMO06408 Report

Search the DGRC for FMO06408

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:64
Well:8
Vector:pMK33-CFH-BD
Associated Gene/TranscriptHph-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06408.5prime Sequence

1155 bp (1022 high quality bases) assembled on 2008-09-15

> FMO06408.5prime
CAGTCGACATGAGCAGGGGTCGCGGAAAGGTCAGGGATTCAGCAAGCCAT
TCCGGCTCCCACTCCGCATCCAAATCGGCCATGGACCCGCCGCGCTGCTC
CATCTGCGGCACTCAGCAGCAACTACTGCGCTGCGCCAAGTGCAAGGCCG
TCTACTACTGCTCCCCCGCCCACCAGCATCTCCATTGGCCCGACCACCGC
ACCGAGTGCCGCCTCCTGACCCGCCAAAAGCTCAACAGCAGCAACAACAA
TAAGCAGCAGCAGCGGCAGCAGATCCAGCAACTGCAACAAGCTGTGGCAT
CTGCCAATCTGGAATGCAGCGGCGCCGGCGCCAACTGCTCCACCGCCCAG
ATGATGACGCCTGCCCACCAGGCGCAGAGTTGGCCCGCCGAGGTAGACAA
CCTGCTGAATCTCCTCGGGCAGCCGGGCAGCCAGGAGAAGGCTGCAGCTG
CGGAAACGGAAACAGGTCAAAGGCAGCAGCAGCACCAGCATCATCACCAT
AATGGCGAAAAGAGCTCCAGCTATCAAATCGGTCTGGCGGATGCCAGCTT
CATGGGATCAGGAAGTGAGCGCCGCTATGAGGATCTGTGCCGTAACATCA
TCAGCGACATGAACCAGTATGGTCTGTCCGTGGTGGACGACTTCCTGGGG
ATGGAGACGGGCCTGAAGATCCTCAACGAGGTTCGAAGCATGTACAACGC
AGGAGCCTTCCAGGATGGCCAAGTGGTGACCAACCAGACGCCCGATGCAC
CCGCGGTGCGCGGTGACAAGATCCGAGGCGATAAGATCAAGTGGGTTGGT
GGCAATGAGCCGGGCTGCAGCAATGTCTGGTATCTGACCAATCAGATTGA
CTCTGTGGTGTATCGTGTTAACACGATGAAAGATAATGGGCATCTTGGGC
AACTACCACATCAGGAAGCGCACGAGGGAATGGGTCGCTTGTTATCCGGG
ATCGGGAACTCACTACGTCATGCATGGTGGACAATCCCAAAAGGATGGCC
GCGTTTAACGGCCCTATACTACCTGGAATATCAACTGTGGATGCGCGGGA
AGTGGCCGCATCTGGCGAATCCGGCCAACACACCGGACACAGTGGCGAAT
TGGGGCCCAAGTTTGGATCGCCTTGAAATTCTTGGCGGAACTTCGAATTC
CCACA

FMO06408.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-RD 3171 CG44015-RD 529..1652 9..1133 5115 97.7 Plus
Hph-RC 2496 CG44015-RC 529..1652 9..1133 5115 97.7 Plus
Hph-RA 2337 CG44015-RA 699..1266 565..1133 2335 95.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5257565..5258121 9..565 2785 100 Plus
3R 32079331 3R 5266751..5267032 564..845 1410 100 Plus
3R 32079331 3R 5267117..5267202 842..928 355 96.6 Plus
3R 32079331 3R 5267268..5267385 933..1051 340 95 Plus
Blast to na_te.dros performed 2014-11-28 19:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2409..2662 233..502 141 56.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2377 445..502 132 72.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2380 442..499 132 72.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2296..2352 463..521 110 67.8 Plus

FMO06408.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:50 Download gff for FMO06408.5prime
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 529..1617 9..1097 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:55:06 Download gff for FMO06408.5prime
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 525..1613 9..1097 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:15 Download gff for FMO06408.5prime
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 529..1617 9..1097 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:15 Download gff for FMO06408.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5257565..5258121 9..565 100 -> Plus
3R 5266753..5267032 566..845 100 -> Plus
3R 5267121..5267201 846..927 96 -> Plus
3R 5267263..5267402 928..1067 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:50 Download gff for FMO06408.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1092985..1093124 928..1067 91   Plus
arm_3R 1083287..1083843 9..565 100 -> Plus
arm_3R 1092475..1092754 566..845 100 -> Plus
arm_3R 1092843..1092923 846..927 96 -> Plus