FMO06409.5prime Sequence
1129 bp (885 high quality bases) assembled on 2008-09-15
> FMO06409.5prime
CAGTCGACATGCCGTCGACGCCGTACGATCTGGTCCAGGATGACCAGGAT
CTGCGGGTGCCGCTGCACGCCGAGCAGGCCTTCTTCCACGGCATCACATT
TCAGGCCAAGTTCGTTGGCTGGGAAGAGGTGCCACGACCGAACACTCGAG
CCGAGATTGTTCAGGCCATGCGACGCATAAGGTACGAGTGCAAAGTGCAG
AATCTGAAGAAGCGAAAGGTCACCATTCACATATCGGTAAATGGCGTGCG
CGTTGTGCTCAAAAAGCGCCGTCGAAAAAAAAAGAACTGGACCAATGACC
CCGAGGACATCGAGTTGCTCAATCATCCCATCTATAAAATATTCTACGTG
TCCCACGACAGCAGCGATCTCAAGATATTCAGCTACATAGCGCGCGATGC
CAGCACGGATACGTTCAAGTGTTCCGTCTTCAAAAGTCACAAAAAGTCTC
AGGCGATGCGCATCGTTCGCACCGTGGGACAAGCCTTTGAAGTGTGCCAC
AAATTTAATCTTCATAAGAATTCCCTGGAACCCAATGACGAACGCTCCGA
TATATCCTCATCGGAGCTGCTGGACGTGGAGCAGATCAGCGAGCAGCAGC
TATCCGAGGATGGTGAACGCGGTGGTGGCGACAACGAGACGCCCAAGGAA
GAGCACTTGGCCATAACGCCCGATCTGAACCACACGCAGCCGCAGCGGCC
GAACCACTTGGATATAATGCCATCGCATTCGAGTCTACGCAATCGAACAG
CCTGCTGTGCGATGTGGACGACAGTCGCCAGGCTCACCTTCCTCGCCGCG
CTCTGAGATCACTCAGCTGAAGGACCAGCTGGGAGGCACAGGCTCTGCAG
ACGCGCCAGGCTCTGGGTCAACTGATGCTGGTGCGGGAGCAGCTCATCTC
GGAGACCAATGCGCGCATCGAGGCACAGGAGCGCACCCAACAATTTGTTG
CAGCAGACCGCGAGCTCCTGGAGCCACCTGGGCCTCTTTGGGGGCCTACA
TGAGCAGCGACGGCGGACTCCCGTCGGCCACATTGGAATGGCGCACCAGC
TATGGCAGCTACGAATGGCTGCGGAGGGCACAGAAAGACAACAATCTGGG
CCTCGATCTACCCACAAATCGCATCCTGG
FMO06409.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42673-RB | 3618 | CG32048-RA | 792..1907 | 9..1120 | 4895 | 96.7 | Plus |
| CG42673-RD | 3582 | CG42673-RD | 792..1839 | 9..1053 | 4835 | 98 | Plus |
| CG42673-RC | 3902 | CG32048-RB | 1512..2191 | 445..1120 | 2730 | 94.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9588238..9588444 | 445..651 | 1005 | 99 | Plus |
| 3L | 28110227 | 3L | 9581546..9581713 | 279..446 | 825 | 99.4 | Plus |
| 3L | 28110227 | 3L | 9592085..9592257 | 757..929 | 770 | 98.9 | Plus |
| 3L | 28110227 | 3L | 9553435..9553536 | 9..110 | 510 | 100 | Plus |
| 3L | 28110227 | 3L | 9591239..9591347 | 650..757 | 495 | 99.1 | Plus |
| 3L | 28110227 | 3L | 9581390..9581486 | 182..278 | 485 | 100 | Plus |
| 3L | 28110227 | 3L | 9575649..9575722 | 109..182 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:08:27 has no hits.
FMO06409.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:42 Download gff for
FMO06409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42673-RB | 786..1782 | 1..1000 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:06 Download gff for
FMO06409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32048-RA | 786..1782 | 1..1000 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:55 Download gff for
FMO06409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42673-RB | 786..1782 | 1..1000 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:55 Download gff for
FMO06409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9553429..9553536 | 1..110 | 96 | -> | Plus |
| 3L | 9575651..9575722 | 111..182 | 100 | -> | Plus |
| 3L | 9581391..9581486 | 183..278 | 100 | -> | Plus |
| 3L | 9581546..9581713 | 279..446 | 99 | -> | Plus |
| 3L | 9588240..9588444 | 447..651 | 99 | -> | Plus |
| 3L | 9591241..9591347 | 652..757 | 99 | -> | Plus |
| 3L | 9592086..9592256 | 758..928 | 98 | -> | Plus |
| 3L | 9592334..9592403 | 929..1000 | 91 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:42 Download gff for
FMO06409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9546529..9546636 | 1..110 | 96 | -> | Plus |
| arm_3L | 9568751..9568822 | 111..182 | 100 | -> | Plus |
| arm_3L | 9574491..9574586 | 183..278 | 100 | -> | Plus |
| arm_3L | 9574646..9574813 | 279..446 | 99 | -> | Plus |
| arm_3L | 9581340..9581544 | 447..651 | 99 | -> | Plus |
| arm_3L | 9584341..9584447 | 652..757 | 99 | -> | Plus |
| arm_3L | 9585186..9585356 | 758..928 | 98 | -> | Plus |
| arm_3L | 9585434..9585503 | 929..1000 | 91 | == | Plus |
