FMO06411.5prime Sequence
1095 bp (891 high quality bases) assembled on 2008-09-15
> FMO06411.5prime
CAGTCGACATGGATATCTCCGCCTACCAGCACATGAACATCCGGATGAGC
ACGCGCGGCAAGCGTCCTCTGAGGAACCTCACGCCCAACGACAAGGTGCG
TGCCATCCAGCGCATCCACAATGGTGAAACCAAGGCGAGTGTGTCGCGGG
ACATCGGAGTGCCGGAGTCCACGCTGCGTGGCTGGTGCAAGAACGAGCAG
AAGCTGCGCTTCATGTGCCGCCAGCTGGGCCCCGATCACCTGGGTCTCGA
CACGCCACCGGAAAAGCGCGCCAAGTTCGAGCTGCAGCTCCAGCTGCCAC
CGAAGTTCGTGGCACTGCCTCCAAACTACGAGGAGCTGGGCTTCGGTGCA
CTGCCCTACAGTCCAGCCGATTACCCAGTGCAAAATGAATCCCTGCTGGA
GAAGCTTAGCCTTGTGGAATTTGTAAAAAAGAACGGTGGATTGCATCCGG
AGGGTGCACTGCATCCGGGTCAGGCCGGCGTGATGGACTACTCCAACAAC
ATGCTGCACCAGCTGAATCTTCTGGCCCTGCTCAACTCCAAACTCACCCC
ACAGACTGCCGATGTCCTGGTAGATGCACAGCCGAAATCAGAGGACAACA
AAGTGATTGATTCGCCCGCTGCTTCCGAGGATTTACAGCAAAAACAAATT
ACCCCTTGCTGAGTGTTAAGAAACTGGGCCAAGGATCCGGCCAAGCGGGT
GAACTCCGCCAATCAGCCGGAGCAAGTGAACGATAAGAACAACAATGCCC
TGGAGGCCAACAGTTCCGCACCACAAGCTCTTGTCACGGAGCAGCGAAGA
CTCCCATGTTTCTCGGACACCACAATGCCCCTAACTGCCAGCTACCTTCC
CGAATCCTGCGGATCTAGCGCCTGTGATAGCACCAGTGACTCCCGCAACG
CCCGCCCACTGAAACCGATAACCAGGAGCGCTCTGCTCGAACTGATGCAA
GCTCTTCAATGCCAGTTGAACTTCCTGCCTTCGCTGCCGCGCAGCTTCCA
TTGCAGCCCGCGCGAAGACCAAGGTGAACCCAGCTAACATCCCAAACTAA
TTGACCAGCGTGCGATCGGAATCCGGATTCTCGAAACATATTCTT
FMO06411.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| danr-RA | 1832 | CG13651-RA | 161..1248 | 8..1095 | 4660 | 96.4 | Plus |
| dan-RC | 3968 | CG11849-RC | 1078..1292 | 10..224 | 475 | 81.4 | Plus |
| dan-RB | 3340 | CG11849-RB | 450..664 | 10..224 | 475 | 81.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25138232..25139212 | 8..987 | 4215 | 98 | Plus |
| 3R | 32079331 | 3R | 25189916..25190130 | 10..224 | 475 | 81.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:44:56 has no hits.
FMO06411.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:38 Download gff for
FMO06411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| danr-RA | 156..1243 | 8..1095 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:57:10 Download gff for
FMO06411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| danr-RA | 156..1243 | 8..1095 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:49 Download gff for
FMO06411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| danr-RA | 161..1248 | 8..1095 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:49 Download gff for
FMO06411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25138232..25139319 | 8..1095 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:38 Download gff for
FMO06411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20963954..20965041 | 8..1095 | 96 | | Plus |
