FMO06413.5prime Sequence
1140 bp (1025 high quality bases) assembled on 2008-09-15
> FMO06413.5prime
CCTATACGAAGTTATCAGTCGACATGACGGCCAACACAGGGACGTCGGGT
GAAAATCTGATGGGAAATGGTGGAAAGACGCATGAACCCTCCACGCCCAC
TTCGGATACGGAAGTGGCCAGCGGCACGCCAACGGAACTGAGCGAAATCT
TCTTCGTGGACAATAGCCGGCGCAAGCAGAGCATCAAAATCCAGGTGAAA
CTATGCCCGGAAGGCGTTTACCTGCGACGCGAAACCGAGGAAGATGATCA
CATCAATGAGCAGCTGATCAGGATCGATGATATCATAGGATCACGCTACG
GACGGCGTTTGAAGAAACGAGCCCGAGGCGGTCTAAACTCCTGCCGCAAT
CCAAATGTTCCGGGCCAGGAGGCGGATTCGGAACCGGATAGCGATAATAG
CGCCTATTTGTACATCTATGCATATTTGAAGAAGGAGAAACCGTTGCGAC
GTGTCCAAACGCTCCGGATTCTACGCTTTCGTTCGAGCAATGACTACGGA
GTGAATCTACAGACCGCCGAGATGTGGCATCATACGATTCGAAAGCACAA
GCGTGGCAATGGCAGCAGTTCGCCCGCCGATTGTGGCAAACAGTTGCTCA
TCCTACTGAATCCGAAATCCGGTTCGGGCAAAGGGCGTGAGCTCTTCCAG
AAACAGGTGGCACCTTTGCTGACGGAAGCAGAGGTGCAATACGATCTCCA
GATCACCACACATCCGCAGTATGCCAAGGAGTTCGTGCGGACCAGAAGGG
ATCTGCTGACACGCTATTCGGGCATTGTGGTTGCCTCCGGCGATGGTCTA
TTCTACGAAGTGCTCAATGGGCTAATGGAACGCATGGATTGGCGCCGAGC
CTGCAGGGAGCTACCGCTTGGCATTATACATGTGGTTCCGGGAATGGTCT
GGCCAAAGTGTGGCCCATCATTGCAATGAACCGTACGAACCGAAGCCATT
CTCCACGCCACCTTGACCTGCATGCCGGCAAAGTACACCATGGAGTGGTC
AGAGTGGAGCTGGCGAACCGGGACAGCACTTTGTCGAGTACTCCTTCTTG
TCGGTGGGCCTGGGGTCTGATAGCCGACTACGAATTAAGGAGCGAGCGAT
TGGAAATCGAATGGAGCCCAGGGTTAACCTGGGCTAACAT
FMO06413.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:53:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sk1-RA | 2680 | CG1747-RA | 303..1402 | 24..1117 | 5035 | 97.8 | Plus |
| Sk1-RB | 2616 | CG1747-RB | 237..1336 | 24..1117 | 5035 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:53:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11443633..11444718 | 24..1102 | 4810 | 97.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:53:34 has no hits.
FMO06413.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:41 Download gff for
FMO06413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk1-RB | 230..1339 | 17..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:55:14 Download gff for
FMO06413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk1-RA | 88..1197 | 17..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:11 Download gff for
FMO06413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk1-RB | 230..1339 | 17..1120 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:11 Download gff for
FMO06413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11443626..11444735 | 17..1120 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:41 Download gff for
FMO06413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11337659..11338768 | 17..1120 | 97 | | Plus |
