FMO06416.5prime Sequence
594 bp (345 high quality bases) assembled on 2008-09-15
> FMO06416.5prime
CAGTCGACATGTCGGAATACAAGTACCTCTCGGGTTTTGGGTCTCACTTC
TCATCTGAGGATGAGCGGTATCCCAACTCCTTGCCAGTGGGACAGAACTC
ACCTCAAGTGTGCCCATACAAACTCTATGCGGAGCAGCTATCCGGAAGTG
CCTTCACTGCGCCCAGGACGGAGAATATGCGCACGTGGCTCTACAGGAAG
TTGCCCTCTGCCGCGCACCTTCCATTCCAGCCCTTCAAGGGAGCTGAGTA
CTTTAGTCAAAACTGGGATGAGCAGCCACCGAATCCAAACCAGCTTCGTT
GGAAACCCTTTGACTTGCCTCCAAAGGATGGAAAAAATGTGAACTTTGTG
GAAGGCTTGCACACGGTTTGTGGAGCGGGAGATCCCAGATCTCGTCATGG
TCTTGCCATACACATTTACTCCTGCAATGGCTCGATGGATAACTCAACTT
TCTATAACAGCGATGGTGATTTTTTGATTGTGCCCCAGCAAGGAGTCTTA
GATATAACCACAGAGTTTGGAAGGATGTCTGTAGCCCCAAATGATATCTG
CGTTATCCACAGGGAATACGATTTGCTGTAAATGTGGATTCTCC
FMO06416.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hgo-RA | 1445 | CG4779-RA | 38..627 | 6..594 | 2895 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11136804..11137075 | 22..293 | 1360 | 100 | Plus |
| 2L | 23513712 | 2L | 11137142..11137330 | 292..480 | 930 | 99.5 | Plus |
| 2L | 23513712 | 2L | 11137395..11137510 | 480..594 | 515 | 98.3 | Plus |
Blast to na_te.dros performed 2014-11-28 22:44:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 7946..7976 | 469..500 | 112 | 87.5 | Plus |
FMO06416.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:20 Download gff for
FMO06416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hgo-RA | 36..627 | 1..594 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:55:18 Download gff for
FMO06416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hgo-RA | 34..625 | 1..594 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:23 Download gff for
FMO06416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hgo-RA | 36..627 | 1..594 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:23 Download gff for
FMO06416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11137144..11137330 | 294..480 | 99 | -> | Plus |
| 2L | 11136806..11137075 | 24..293 | 100 | -> | Plus |
| 2L | 11137396..11137510 | 481..594 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:20 Download gff for
FMO06416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11136806..11137075 | 24..293 | 100 | -> | Plus |
| arm_2L | 11137144..11137330 | 294..480 | 99 | -> | Plus |
| arm_2L | 11137396..11137510 | 481..594 | 98 | | Plus |
