FMO06417.5prime Sequence
598 bp (596 high quality bases) assembled on 2008-09-15
> FMO06417.5prime
CAGTCGACATGACCGCCCGCAATCCTCAGACACTGATGGCACTGCCAAAC
GAGGAACACTTCGACTTCCTGTTCAAGATCGTCCTCATTGGTGACTGCGG
GACGGGGAAGACCTGCATAGTGGACAGATTTAAGACAGGGAACTACATAG
AGCGACATGGGAACACCATCGGAGTGGACTTTTCGATGAAGACCATCGCC
GTGGAGGGCAAACAAATCATGCTACAAATCTGGGACACTGCTGGTCAGGA
GAGGTTTCGCACTATTACGCAGAGCTATTATCGCTCGGCCAACGGGGTCT
TAATTGTTTACAACATCACCAAGGGGTCTTCCTTTTCCAATCTGCAAAAA
TGGATCGAAGAAGTGCGTAGATACACTGCTTCTAATGTTTTGATAATCCT
CGTGGGCAACAAGTGCGATTTGGAGGAGCAGCGCGAGGTGGACTTTGAAG
AGGCGCGCCAGATGTGTCAATATATACCTGAAATCCTGTTCGTGATGGAG
ACCTCCGCCAAGGAGAACATGAACGTGGAGGACGCCTTCCGCTGCCTGGC
CAACGAACTTAAACGCCAACACGATGCCAACAATGTGGGAGGAGGTGC
FMO06417.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab19-RB | 1062 | CG7062-RB | 121..709 | 9..598 | 2865 | 99.2 | Plus |
| Rab19-RA | 1033 | CG7062-RA | 92..680 | 9..598 | 2865 | 99.2 | Plus |
| Rab30-RD | 1305 | CG9100-RD | 548..673 | 164..289 | 210 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8297814..8298071 | 306..563 | 1245 | 98.8 | Plus |
| 3L | 28110227 | 3L | 8297260..8297470 | 9..219 | 1055 | 100 | Plus |
| 3L | 28110227 | 3L | 8297534..8297619 | 221..306 | 430 | 100 | Plus |
| 2L | 23513712 | 2L | 7031867..7031992 | 289..164 | 210 | 77.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:40:34 has no hits.
FMO06417.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:50 Download gff for
FMO06417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab19-RA | 92..680 | 9..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:55:20 Download gff for
FMO06417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab-RP3-RA | 89..677 | 9..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:32 Download gff for
FMO06417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab19-RA | 92..680 | 9..598 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:32 Download gff for
FMO06417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8297815..8298071 | 307..563 | 98 | -> | Plus |
| 3L | 8298120..8298153 | 564..598 | 97 | | Plus |
| 3L | 8297260..8297472 | 9..221 | 99 | -> | Plus |
| 3L | 8297535..8297619 | 222..306 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:50 Download gff for
FMO06417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8290360..8290572 | 9..221 | 99 | -> | Plus |
| arm_3L | 8290635..8290719 | 222..306 | 100 | -> | Plus |
| arm_3L | 8290915..8291171 | 307..563 | 98 | -> | Plus |
| arm_3L | 8291220..8291253 | 564..598 | 97 | | Plus |
