FMO06418.5prime Sequence
802 bp (802 high quality bases) assembled on 2008-09-15
> FMO06418.5prime
CAGTCGACATGCTGCGCTACCTGCTCATTCTTTGCGCCCTCGGAAGCGCT
ACTTGCGGCGATGTTGAGCTACTAACTCAAACTGTCTATGGCTTCCTGGA
CTTCACAACCACGATTGGGAATACCGTCATGGTGTTCTCACCCCAAAGTT
CTCCAGCCTTTGAACTTAAATCCAACGACACGCACGAAATAATAAATATT
ATAGAGACTAAGCCGAAAGTGACGAAGAAGGAAAAGGAGAATGTCGGCAT
CAAGCCAACGCCTTTGATCGTGACTCACTCGAATGAAATTCCCGAAACCG
AGACATCCCAGATTGAATCTTACAACATAAGTCTCTCCAACTCGCCCATC
CAAACGCTTTTGAATACCCCCGAATACGATCTGCTCTCCCGCCAGCCCGA
GCAGTTTGCCGAAGAAACCTATCGCCTGGTCAACTTCAAGTCCAAGAGCG
AGGCTGATCGCCAAAGGATATACCCGTCCAAGAAGGAGCCCGTACATGGC
TACCAGGCTACGAGATCCACTGAATTCAGGAGCATTGTGACGGCAACCAA
GGACTCTGGTAAATTCTCCAAGGTCTCCCAGGTTTCACGCAGTCTCCAGT
GTGGAGAAGAAGAGCAAGCCCCGGCAGTCGCGGACCAACAAACCAGTTAC
GCCCTCGATCCAGCCGAGCAGGACTCTGAAGGAGTCCTCTATCCAGACCC
AACTAGCCAGCAAGCCACCAGGAAGAGCCACCAAAGTGGTCGCGACAACC
GAGGATCGTCGGGCACCATACAGCCTTCGCGTCCCAAGGGAAGCGGAGGA
AC
FMO06418.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16786-RC | 2931 | CG16786-RC | 307..1101 | 9..802 | 3875 | 99.4 | Plus |
| CG16786-RA | 2800 | CG16786-RA | 307..1101 | 9..802 | 3875 | 99.4 | Plus |
| CG16786-RB | 2815 | CG16786-RB | 322..1116 | 9..802 | 3875 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24083651..24084281 | 162..792 | 3030 | 99.4 | Plus |
| 2R | 25286936 | 2R | 24083470..24083584 | 48..162 | 575 | 100 | Plus |
| 2R | 25286936 | 2R | 24083030..24083069 | 9..48 | 200 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:20:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 6046..6118 | 159..229 | 116 | 67.6 | Plus |
FMO06418.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:50 Download gff for
FMO06418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16786-RB | 322..1116 | 9..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:55:21 Download gff for
FMO06418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16786-RA | 357..1151 | 9..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:52 Download gff for
FMO06418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16786-RB | 322..1116 | 9..802 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:52 Download gff for
FMO06418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24083030..24083069 | 9..48 | 100 | -> | Plus |
| 2R | 24083471..24083584 | 49..162 | 100 | -> | Plus |
| 2R | 24083652..24084289 | 163..802 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:50 Download gff for
FMO06418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19970553..19970592 | 9..48 | 100 | -> | Plus |
| arm_2R | 19970994..19971107 | 49..162 | 100 | -> | Plus |
| arm_2R | 19971175..19971812 | 163..802 | 98 | | Plus |
