FMO06419.5prime Sequence
433 bp (245 high quality bases) assembled on 2008-09-15
> FMO06419.5prime
CAGTCGACATGCCAGCCATTGGAATCGATTTGGGCACCACATACTCCTGC
GTGGGAGTCTTCCAGTACGGAAAAGTGGAGATCATTGCCAACGACCAGGG
TAACCGTACCACACCATCGTACGTGGCCTTCACCGACTCGGAACGCCTTA
TTGGAGATGCCGCCAAGAACCAGGTGGCCATGAACCCCAAGAACTCTGTG
TTCGATGCCAAACGCCTGATTGGGCGTCGTTTCGACGATTCCAAGAACCT
TGAGGACATTTAGCACTGGCCGTTCAAAGTGATCAACGACAACGGCAAAC
CATAGATAAGCGTGGAGTTCAAGGGCGCGAATAAGTGCTTCTCTCCCGAG
GAGATTACCTCGATGGTACTCACCAAAATGAAGGAGACTGCAGAAGCCTA
CCTGGGCACTACAGTGAAGGACGCTGTCACCAC
FMO06419.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp68-RA | 2231 | CG5436-RA | 207..631 | 9..433 | 2020 | 98.4 | Plus |
| Hsp70Bc-RA | 2386 | CG6489-RA | 243..641 | 9..407 | 720 | 78.7 | Plus |
| Hsp70Bb-RA | 2347 | CG31359-RA | 243..641 | 9..407 | 720 | 78.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24056680..24057104 | 433..9 | 2020 | 98.4 | Minus |
| 3R | 32079331 | 3R | 12502752..12503150 | 9..407 | 720 | 78.7 | Plus |
| 3R | 32079331 | 3R | 12506035..12506433 | 9..407 | 720 | 78.7 | Plus |
| 3R | 32079331 | 3R | 12509318..12509716 | 9..407 | 720 | 78.7 | Plus |
| 3R | 32079331 | 3R | 11955891..11956289 | 407..9 | 705 | 78.4 | Minus |
| 3R | 32079331 | 3R | 11958789..11959187 | 9..407 | 705 | 78.4 | Plus |
| 3R | 32079331 | 3R | 12467159..12467557 | 407..9 | 705 | 78.4 | Minus |
| 3R | 32079331 | 3R | 15244379..15244793 | 19..433 | 575 | 75.9 | Plus |
| 3R | 32079331 | 3R | 13044970..13045131 | 15..176 | 375 | 82.1 | Plus |
| 3L | 28110227 | 3L | 13974583..13974765 | 12..194 | 345 | 79.2 | Plus |
| 3R | 32079331 | 3R | 13045581..13045791 | 170..380 | 230 | 73.9 | Plus |
| 3L | 28110227 | 3L | 13975916..13976119 | 204..407 | 225 | 74 | Plus |
Blast to na_te.dros performed 2014-11-28 19:05:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| looper1 | 1881 | looper1 LOOPER1_DM 1881bp | 1016..1055 | 283..322 | 110 | 75 | Plus |
FMO06419.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:18 Download gff for
FMO06419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp68-RA | 199..631 | 1..433 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:55:23 Download gff for
FMO06419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp68-RA | 196..628 | 1..433 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:26 Download gff for
FMO06419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp68-RA | 199..631 | 1..433 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:26 Download gff for
FMO06419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24056680..24057111 | 1..433 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:18 Download gff for
FMO06419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19882402..19882833 | 1..433 | 97 | | Minus |
