FMO06420.5prime Sequence
1139 bp (984 high quality bases) assembled on 2008-09-15
> FMO06420.5prime
CAGTCGACATGGTGTTGCCCCAACTGATTCTTCTATTCGTCGTTTTGATC
AACGATGTCCACGGCATCCTGCCACCTTCTGGCTACGACGACGATACATC
GCCACTGCCACTCCGCCTTGACGACTTGGAACGGGACCACCTGCAGCAGT
TGGACCTCAATCGGCCGCCACTTCTGCCCAATCACTACGAATGGCACCCG
GATGTGGCCGCCAGTCTGCCGCCCAGCTACATTCAGGAGGCCGCCCAACG
GGATCGGGAGCGCGAGCGTGATCTCGAGCGTAATCGGCGACTGGAGGAGC
TGCGTCAGCTGCAGCAGCAGCATCAGCAGCTGAGTTCGGGCTACGCCTTT
CCTGCCCACCTGCCAGGTGTGCTCTATGTTGGTCCCACAGCTGCCACGCC
CACTCCCACGCCCTCGGCAGCGACGACGAAAGTGGCCTCTTCTGCAACTC
CATTTGCCAATCCCATAGTTCCCTACGACTTGGAACTGGGGCTGCGCCCC
ATTCCATATGTAACCAGTAATGCCCTGCCCCTTCCAGTGCCACGCCCCCT
TCCGCCACCCCATGCCCGAGCGCCGTTCATCTACGGATTTACCGCCCAGG
GCAACCGAGCAACCAGCCACAAGCTGCCGGGTCAGCCCCTGCTGGTCCAG
CAGTCCAAACAGTTCGCCTACGCTCCCGCTCAGCCCCCCCAGCGGCACTA
CGCGAATGGGCCACGGGTTCCGATACCGTATCCCCCAAGCTTTGTGAGCT
TTACCACTCGGAGACCGGGTTCGGAGCGTATCAGCCATTCCGGCCATCGC
AACCGGATCCCACGCCCGATTTGTTGCTGGACGCTCCTCGAAATATTGAT
CGACTCGTACATTCCCAGCTGGGAGGTACTGGCGCCTGATCAGACAGCAC
CAGCCGCAGCAGGATTCACGCCCATCGCACGCCCAACACTCGCGTATCCC
GCTCCGGCGCACTTGAGGCTCTACAAGCGAAATCCCAGGAGGACCGGGCC
GAGAAATCGTCAGGGAAACCTAACCCGAACCTGCAAGCTTTCTAGACCAT
TCGTTGGCGCGCGGGGCCAGTAATGGTCCAAATTCAAATACTTATCATAT
CTCTAATCACAACTGGCCTAGGGAAATTCTGGCCTTGAA
FMO06420.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14626-RA | 1413 | CG14626-RA | 307..1333 | 8..1032 | 4860 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1187851..1188505 | 380..1032 | 2800 | 97.9 | Plus |
| X | 23542271 | X | 1186758..1187126 | 11..379 | 1845 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:40:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6865 | 277..329 | 121 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2384 | 295..332 | 118 | 78.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2373 | 283..330 | 114 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6817 | 246..332 | 111 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6827 | 246..330 | 110 | 58.8 | Plus |
FMO06420.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:58 Download gff for
FMO06420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14626-RA | 300..1340 | 1..1040 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:55:24 Download gff for
FMO06420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14626-RA | 296..1336 | 1..1040 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:43 Download gff for
FMO06420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14626-RA | 300..1340 | 1..1040 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:43 Download gff for
FMO06420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1186749..1187126 | 1..379 | 98 | -> | Plus |
| X | 1187851..1188512 | 380..1040 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:58 Download gff for
FMO06420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1080782..1081159 | 1..379 | 98 | -> | Plus |
| arm_X | 1081884..1082545 | 380..1040 | 97 | | Plus |
