FMO06421.5prime Sequence
1158 bp (1048 high quality bases) assembled on 2008-09-15
> FMO06421.5prime
CAGTCGACATGGAGGACGAGTGGGGCTCCTTTGATCGTCTGCCCAGTGTT
CCGAGTGCCTCGATGGATTTGGAGACGGAAAACGAGGTGGTCAGCAATTG
GTCCACACTGGCCAACTTCACGCGACTTGTGGCTGGTGCCGCTCCTGAAA
TCGTCAACTATACGCTCAACATGATCGACGTGGGTGTGGGCATGGCCACG
GATATATCCAATTTGAGCGTGAGCACCACGCCCCTGCCCGCCTACGCAAT
CTCCAATAGCTCCTCACTGGCGCACACCAATAGTCGCCATGAAGCACCAC
CGATGGCGGAACAGGTTCCGGAGCACGTGATGGATCACGCACCTCAACTA
TCCCGATCCGGGTTGCTGAAAGTGTATGTCCTGGCGGTAATGGCACTGTT
CTCTCTGCTGGGCAACCTGCTGACCATCTGGAATATCTACAAAACCCGCA
TCTCAAGAAGAAACTCACGGCACACGTGGAGTGCTATCTACTCACTGATG
TTCCATCTGTCCATCGCCGATGTCCTGGTCACCTGGTTCTGCATTATCGG
GGAGGCCGCGTGGTGCTACACCGTCCAGTGGCTGGCCAATGAGCTCACCT
GCAAGCTGGTGAAGCTCTTCCAGATGTTTAGCCTCTACCTGAGCACCTAT
GTCCTGGTCCTCATCGGAGTGGACCGCTGGATAGCGGTCAAGTATCCGAT
GAAGTCGCTCAACATGGCCAAGAGGTGTCATAGGCTACTTGGCGGTACTT
ACATCCTGTCGCTGGTGCTCAGCTTGCCACAGTTCTTCATCTTCCATGTA
GCGCGTGGCCCATTCGTGGAGGAGTTTACCAGTGCGTCACCCACGGATTC
TACACGGCGGATTTGGCAGGAGCAGATGTACGCCACCTTCACGCTGGTCT
TCACCTTCCTGCTGCCGCTGTGCATCCTGTTGGCACTACATGTCCACCTT
CCGCACCATTTCCAGCAACGAAAAGATGTTCCAGGGATCAAAGTTGCCCA
CTACTCAACGGCCCAAATTGCCCACACAGACGAATCGCAGAAGCTGATAT
CACAAGCCAAGATGAGTCGCTTCCCATATCCGTGGGTGATCATCTTATCG
TTTCCATCTTGCTTGACGCCCCTACTACGTCCTAGAAGATTAGTTTCATG
TTCTTAAT
FMO06421.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CrzR-RB | 3238 | CG10698-RB | 536..1681 | 9..1153 | 5225 | 97.7 | Plus |
| CrzR-RA | 3238 | CG10698-RA | 536..1681 | 9..1153 | 5225 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12347194..12347967 | 782..9 | 3870 | 100 | Minus |
| 3L | 28110227 | 3L | 12342427..12342614 | 965..780 | 745 | 97.9 | Minus |
| 3L | 28110227 | 3L | 12342223..12342363 | 1104..965 | 300 | 88.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:52:36 has no hits.
FMO06421.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:36 Download gff for
FMO06421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CrzR-RA | 528..1681 | 1..1153 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:55:25 Download gff for
FMO06421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GRHRII-RA | 524..1677 | 1..1153 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:43:03 Download gff for
FMO06421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CrzR-RA | 528..1681 | 1..1153 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:43:03 Download gff for
FMO06421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12342428..12342611 | 783..964 | 97 | <- | Minus |
| 3L | 12347194..12347974 | 1..782 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:36 Download gff for
FMO06421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12335528..12335711 | 783..964 | 97 | <- | Minus |
| arm_3L | 12340294..12341074 | 1..782 | 99 | | Minus |
