FMO06423.5prime Sequence
1008 bp (876 high quality bases) assembled on 2008-09-15
> FMO06423.5prime
TTCGAACTTCGAGGGGGATGGTGGTGGCCGTACAGCCCACAGTGGTGTTG
AGCCCCAAAATACCAGATTCCCAGGATAACGAAAAGAAACCGTTTTCAAA
ATCGGAGCCGGGAAATGCAACTGTGAGAGTTAATGCAGGTGGTATAGTTC
TTAACAAAATACCAGCGATTATAAGGCCAAGTATGAAGAGAGCAGCAACA
ACAAAGATGACTGGAGCCACGGCTGCGGGAGCAACAACAACAACATCGTC
AACAGGTGCAGTGGGATATCCCGTTCTCAAAACACCCAAGTATGTGGTTC
AGACTAGTCCGAGTGGATCCTCTGGCCATCAGCTCCAGATGCTGGCGAGG
AAGGACACTCAAAGTCTGGGAGTGGCCATCAATTCACTGCCGCCCAACAC
AATCATCAAAGCAACCACAAGACCTTCACAAACAGCGCCTTTGACACCAA
ACTCAGCGGCTGTCACGCCAAGCACGCCGAGCAGTAGCAGGAAATTCCAC
TCAGTCCACACCAACTGTGGTACCTGATGCGAGAGTTTCCTCCGCCGTGC
GCCAAGCTGTGTTCATCAAGAGGGAGCTACCCCAGCCGCAGAGGAGCATG
CGAAATATGACACTTGGTTTGGTGGAACAGGCGCCACTGCTTCATTTGGG
TGTTGCGCCACAGCACTGTCACTGCTGAAACGCCATATCTGCCGCAATGC
TAATGTCACCCACTTGGACTGTTGCTTGACTCTAGAAACTCAACAAAACG
AGCACTTCGCCCTGTTGGCCCGAGCACTTTGAGCTGAGCGATCAGATGTC
GAGGACACATTTAAGCGCACCCTTATTCAGCTGGCCCGTTACCTCGTCCA
CTGATTCGTGGGCAGATGCACGGCATCACACGGAGCGCTTCAACATTCCC
ACTGACTACGAGTCACTGTTGCATGTACGCTCGTTGATCGAGTGAGTGGA
AACGGACTGCGATAATCGGGATTGGCACGGCACTTAGTCAATTGGGCATC
AATACAAT
FMO06423.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6568-RA | 1813 | CG6568-RA | 102..1130 | 1..1007 | 4390 | 96.6 | Plus |
| CG6568-RB | 1721 | CG6568-RB | 94..1038 | 85..1007 | 3970 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17406101..17406801 | 957..268 | 2720 | 96.4 | Minus |
| 2R | 25286936 | 2R | 17406875..17407057 | 267..85 | 915 | 100 | Minus |
| 2R | 25286936 | 2R | 17407241..17407326 | 86..1 | 430 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:52:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BS | 5142 | BS BS 5142bp | 2000..2073 | 178..251 | 145 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2930..3006 | 189..262 | 144 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2377..2446 | 191..260 | 143 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1479..1587 | 153..259 | 142 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..6817 | 191..261 | 137 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6790 | 191..255 | 134 | 70.6 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6032..6094 | 195..260 | 134 | 69.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6835 | 191..261 | 130 | 64.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1141 | 191..261 | 130 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2420..2484 | 189..253 | 127 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2405..2510 | 156..261 | 125 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2395 | 191..254 | 122 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2419 | 191..260 | 116 | 62.9 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 4260..4290 | 384..414 | 110 | 83.9 | Plus |
FMO06423.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:35 Download gff for
FMO06423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6568-RA | 102..1130 | 1..1008 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:55:11 Download gff for
FMO06423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6568-RA | 100..1128 | 1..1008 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:43:02 Download gff for
FMO06423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6568-RA | 102..1130 | 1..1008 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:43:02 Download gff for
FMO06423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17406079..17406801 | 268..975 | 96 | <- | Minus |
| 2R | 17406875..17407055 | 87..267 | 100 | <- | Minus |
| 2R | 17407241..17407326 | 1..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:35 Download gff for
FMO06423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13294380..13294560 | 87..267 | 100 | <- | Minus |
| arm_2R | 13294746..13294831 | 1..86 | 100 | | Minus |
| arm_2R | 13293584..13294306 | 268..975 | 96 | <- | Minus |
