FMO06424.5prime Sequence
794 bp (794 high quality bases) assembled on 2008-09-15
> FMO06424.5prime
CAGTCGACATGCGTGCTTTTATCGTCCTCTGTCTGTTGGCCGTGAGCTGC
AGTGCCGATAAACTGGGCTACAACTACCAACCCGTGGCACATGCCGATGA
GGGTCTGTCCTTCCTGCCCGGAAGTGGTCAGGTGATTGGAGAACTTCCGT
CGCAGGTGCTGCCCGTGCAGAGTGGCGAAGCAGTCCTCTCCCAGCCCATT
GAAGCACCTGTTGCTCCCCAGATTGCACCTTTGGTAGAGGAGTTCCAGAA
GGAGTTCTACAGCTACGCCGCCCCCGAGGAACAGTACGATGAGGGTGCCA
GCAACCAGCAGATCGCCAACTCCCTGAAAAAGAACCTCCGCGTCGTCTTC
ATTCGCACTCCCGAAAATCAGGGCTTCGAGCGCGCTGCCCTCCAGTTGGC
CAAGCAGTCTGCTCAGCAGGAGACCGCCATCTATGTTCTCACCAAACAGT
CCGATGTGTCCAACCTGGCTAAGCAACTGAATGCCCTGAAGACGAGCTCC
ACCAACAAACCAGAGGTGCACTTCGTCAAGTACCGCACTCCAGAGGATGC
GGCTAATGCCCAACTGGCCATCCAGAACCAGTACAACCAATTGCCCGGCG
TGTCTCGCATCTCCAACGAGGGTCGTGCTCCTGTCCTGAACTTTGCCTCG
TCTCCAGCCCAGGCTGCTGCCATCCCAGCCGTTGCTGCAGCTGCTCCCAG
CTCGGAGTACCTGCCCGCCAATGTGGTGGCTGGCCAGGATTACCTGCCAC
CCAATCTGCGTCGTTTCCGCGTCAAGGCAAGCTTTCTAGACCAT
FMO06424.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlD-RA | 965 | CG14243-RA | 43..818 | 1..776 | 3850 | 99.7 | Plus |
| TwdlN-RA | 1088 | CG5476-RA | 651..845 | 399..593 | 360 | 79.6 | Plus |
| TwdlL-RA | 1002 | CG6447-RA | 576..770 | 399..593 | 315 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26640155..26640907 | 24..776 | 3765 | 100 | Plus |
| 3R | 32079331 | 3R | 26632519..26632713 | 399..593 | 360 | 79 | Plus |
| 3R | 32079331 | 3R | 26624819..26625013 | 593..399 | 315 | 77.4 | Minus |
| 3R | 32079331 | 3R | 26619781..26619971 | 399..589 | 295 | 77 | Plus |
| 3R | 32079331 | 3R | 26622713..26622903 | 589..399 | 295 | 77 | Minus |
| 3R | 32079331 | 3R | 26656932..26657146 | 324..538 | 265 | 74.9 | Plus |
| 3R | 32079331 | 3R | 26628139..26628304 | 562..397 | 260 | 77.1 | Minus |
| 3R | 32079331 | 3R | 26630368..26630533 | 397..562 | 245 | 76.5 | Plus |
| 3R | 32079331 | 3R | 26626194..26626256 | 575..513 | 210 | 88.9 | Minus |
| 3R | 32079331 | 3R | 26620828..26620903 | 574..499 | 185 | 82.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:32:42 has no hits.
FMO06424.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:17 Download gff for
FMO06424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlD-RA | 43..821 | 1..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:55:13 Download gff for
FMO06424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlD-RA | 42..820 | 1..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:28 Download gff for
FMO06424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlD-RA | 43..821 | 1..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:28 Download gff for
FMO06424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26640067..26640089 | 1..23 | 91 | -> | Plus |
| 3R | 26640155..26640910 | 24..780 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:17 Download gff for
FMO06424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22465789..22465811 | 1..23 | 91 | -> | Plus |
| arm_3R | 22465877..22466632 | 24..780 | 99 | | Plus |
