Clone FMO06426 Report

Search the DGRC for FMO06426

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:64
Well:26
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG4133-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06426.5prime Sequence

762 bp (762 high quality bases) assembled on 2008-09-15

> FMO06426.5prime
CAGTCGACATGTCGCCTAAATATCATAATTTCGAGATTGCACTGGTCTAC
TTTCTGCTGCTAATACCATGGCCACCCACGAATGTGATCAGAATCCTCTG
CTCGCGAGATAACAGCCGACTGGTGCGCAAAATAGTGCGCTCCAAATGGA
CTCCCATTCTGGACAAGCATCAGGTGAAGCTGCCGCTGGAGTGCCCGCTC
CATCCGTTCCGGGATGTCTTTGCCCCCCGCCAGGATGCCAAGCAGAGGGA
TCGACCTACTCAGTGGACGTGCAGGAAATGTGGCAAGAGCTTCTACCAGG
AGAAGCATCTGGACTTACATTTCGACACACGCCACAAGAGCATCATCAAT
GAGGCGGAGGATGCCGTTTGCCTGGCCGACTTCTGCGACATTATGCGGTG
TGAGGTATTTGAAACGGAGGACGCATCTAGCCTGAAGTTTGGTGACCAGC
ACATTGTCACGGACATCGAGGTCTGGGGCGACTCCCTGGGCCAGAACTCC
GCGTTGGCCAAAGCGAATGCTGCCTACTTGAGCTTAATACCTAGAACTTC
CACATTGGGTGCCTCGCGTGCCGCCAAAGTACAAAATCGTCAATTACTTC
AAGACAAGCCAAGCCAGGCCAGCAAGCAGAATCAGTCACCGGCAGGTGAG
CGAACACATCCCCAATCCCACCACCATCCCCGAGATCGTGCATCCACCAC
AGCCAATCCCCTTCGCCTAGATCCATCGCCGGAGGACGGGTCGGCGGCTA
GGCCCAAGTCGG

FMO06426.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4133-RC 2642 CG4133-RC 271..1024 9..762 3755 99.9 Plus
CG4133-RA 2629 CG4133-RA 271..1024 9..762 3755 99.9 Plus
CG4133-RB 2554 CG4133-RB 271..907 9..645 3185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 456793..457014 541..762 1095 99.5 Plus
2L 23513712 2L 456537..456729 352..544 965 100 Plus
2L 23513712 2L 456287..456469 172..354 915 100 Plus
2L 23513712 2L 456084..456225 34..175 710 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:05:25 has no hits.

FMO06426.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:27 Download gff for FMO06426.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4133-RA 263..1024 1..762 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:55:31 Download gff for FMO06426.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4133-RA 251..1012 1..762 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:50 Download gff for FMO06426.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4133-RA 263..1024 1..762 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:50 Download gff for FMO06426.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 456289..456468 174..353 100 -> Plus
2L 456539..456729 354..544 100 -> Plus
2L 456797..457014 545..762 99   Plus
2L 456086..456223 36..173 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:27 Download gff for FMO06426.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 456289..456468 174..353 100 -> Plus
arm_2L 456086..456223 36..173 100 -> Plus
arm_2L 456539..456729 354..544 100 -> Plus
arm_2L 456797..457014 545..762 99   Plus