FMO06428.5prime Sequence
1140 bp (1028 high quality bases) assembled on 2008-09-15
> FMO06428.5prime
CAGTCGACATGACTGTGAAATTGGCCAAGCTGTTTGGGGGCGTGACAACG
GGTGGCATTGAGATTCTGGACTCCCCGGGCAATCCGCAACAGCATCAGGA
GCAACAGCATCTGCAGCAACAGCAACAGCAACCACTAACAGCACCGCAAC
AACATATGCAACAGCAACCACCACCTCTGCCGCCACCAAATGCGAATATG
AAGAGTCTCAAGTATTATGAGCACCTGCAGGCCACCTACGACTGTCACGA
TCTGATGGATCATGACCAGGATCAGGATGACTACGAGGACACCTGTATGC
AGCGCAACCATCCGTATAACAATTCGCAGAGACCGCTTTTGGGCGACAGG
CGACCGCAACTCACTGTGATGAGTGTGGGTAAAAAGGGTGCAAAGTCTGG
GATGCAAGTGCAGAATCTGCCACCATTGCCGCCACTAAGGACATACATCT
CACCATATGTGCAGCAACAGAAACGGGATAGCGCGAAGGGATTGCATGGA
TTCAATGACTTCGATGCCCTGTCCCAGCAATATAATCAACACCTTCAGAG
TCCACACATTGGCTATCCCTATGGCAGTCCACCGTCGCCAACGGCTCAAT
CCAGTGATTTTTGCTTTGATCGCCAAACTGGTTTGGTCATGCTGCCCGGC
ACCGCGGGTGGCCAGGTCAGCTCGAGCAGTTCGAGCAACTGCAGCAGTTC
GCACACCACGTCCACCTCCTCGCCCACTAGATATTATCCGGATAATCCCG
GTCATGCCACTGGTCTTTTTGCCTCCCGCTTCGAGGATGACTTTTGCATG
CGTCGTCCTGCCGTCCAGGAAAGTTCATCGCCCATCATTGCCGGTGGTTG
TGGAGGCGGAACAGGATCAGGATCAGAGTGGCACTAGGAGTAGTGGAGGA
CCCTTCATCTTTGGCATTGCACCGGAGCAGCAGTCACGGATTATGGAAGC
ACCCACTGCCACCACCTCCTTCCGCAGCTGAAACAACAATCTGTGATTAT
TCGAAGCCCACTGCAACATCGCTGAGCGAACAAATGGCCGGCAGCAATGG
CAAGGGCTCCAAATTCTTTTTGCGAAGCGTAAACAAAAAAGACATCGCAG
CAGCTCGAGCAACATCGAAGGCCCCAACACGGCCAAAGAT
FMO06428.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoU-RC | 2649 | CG34104-RC | 473..1609 | 9..1137 | 5185 | 97.8 | Plus |
| RhoU-RB | 2687 | CG34104-RB | 511..1647 | 9..1137 | 5185 | 97.8 | Plus |
| RhoU-RA | 2228 | CG34104-RA | 511..1647 | 9..1137 | 5185 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10122197..10123204 | 9..1013 | 4765 | 99.3 | Plus |
| X | 23542271 | X | 10133977..10134091 | 1018..1129 | 185 | 83.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:05:28 has no hits.
FMO06428.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:28 Download gff for
FMO06428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34104-RA | 503..1623 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:55:34 Download gff for
FMO06428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34104-RB | 497..1617 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:53 Download gff for
FMO06428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoU-RA | 503..1623 | 1..1114 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:53 Download gff for
FMO06428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10122189..10123204 | 1..1013 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:28 Download gff for
FMO06428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10016222..10017237 | 1..1013 | 99 | -> | Plus |
