FMO06430.5prime Sequence
813 bp (813 high quality bases) assembled on 2008-09-15
> FMO06430.5prime
CAGTCGACATGACTACCTTAATAGAACAGTTAATTACGAAAATGGGCCTA
AGGGAGGAGCCAAACGTGCTAGAGAAAACCACCGAACTAGTACGCCTCCT
GGAACTGCGCTCCACGAATGTCCCTCTGCAGATCAACGAGTACGGAAAGA
TAGTGCTGTGTGCGGATCTCGCTTCCTGCATGATTGGGATCGCTTTCGAC
AAGGAGCAGGCACTGAAATTGTCAGGATTGCGAAAGAGCCAATACCTCAA
CAACAAGCGGATGTTCGAGAAGCTACTGGACCTAAACAAACTGGCTAGCG
TGAATGACATCTGTGTCCAGCTGGGTCTCAACGAAGTTGCCCGCAAGGCG
GAAGAGCTAATGACTCTCTTCAAGGGCGTAGCGGCCACCGAGGACATGGG
TACCGACACCAGCCATCCTTAGTACGCCACCATGGCCGTGTTCCAGGCCT
GCCGCCTGCTCAAAAAGAAGGTTTCGAAATCAAAGCTCATGCCCTTCAGT
AATTTGCGACCCTCCCAGTTTCAACTGCTCGAGCAGCAGTGGGAACGCAT
GATAGCTAAGCACCACAAGGAGAGCAAAGTACCATCTAGCACCGATATGG
AGGGTAAACTTAAGGAGAACCAGAATGAGAATATCAAGGGTCATGAGGCA
AAAAAGGCACATAAGCCCCCCACCGGAGGACTACGAAATATGGAAGGCGC
GAATGTTGGCCAAGGCGCAAGCCAAATTGAAGGGAATTAGAAGCATCCCA
ATCGCATATGGATAGCCAGCTTCTCGAGGGCTGCAAGCTTTCTAGACATT
CGTTTGGCGCGCG
FMO06430.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc6-RA | 972 | CG1584-RA | 92..860 | 9..779 | 3775 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9845570..9846273 | 779..74 | 3400 | 99.4 | Minus |
| 2R | 25286936 | 2R | 9846329..9846394 | 74..9 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:20:42 has no hits.
FMO06430.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:52 Download gff for
FMO06430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc6-RA | 92..867 | 9..788 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:55:35 Download gff for
FMO06430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc6-RA | 66..841 | 9..788 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:53 Download gff for
FMO06430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc6-RA | 92..867 | 9..788 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:53 Download gff for
FMO06430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9845563..9846273 | 74..788 | 98 | <- | Minus |
| 2R | 9846330..9846394 | 9..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:52 Download gff for
FMO06430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5733068..5733778 | 74..788 | 98 | <- | Minus |
| arm_2R | 5733835..5733899 | 9..73 | 100 | | Minus |
