FMO06431.5prime Sequence
752 bp (752 high quality bases) assembled on 2008-09-15
> FMO06431.5prime
CAGTCGACATGAAGCCCCAGAGCAAGCGGAAATCATTCCCATTCAATGCG
CCTCCTCCGGGCGGTATCATGGACTTCGGATTCGGGAGCTGCAGCACCTT
CGGCAATTCGGTGGAGAATGATCTGGTAAAATGGCAGCATAAGCGAAAAT
CCGAGCAGCCGGCACCGGCAGTGCTACCACCCAAAATGCTTATAACCGAG
GAGAGGATCACCCAGCATTTCAGCGGTCTATCGCTGGATCCGAAGATCAA
TGTCGCCGCCACGGCCGTTGTTAGCAACAACAACAGCGTGGCCAGCGTTA
CGGGCGGACTGGCCACGGATGATATACCATCCACCAGCACCGGGAAGACC
CACCACCCCAATCCCGCCTATCAAATGGCGGCCATGGAACTGGAGCAGAA
ACTGCGCAATGCCAATCGCATCGTAATTTGTGATGGCCTTAAGCCAGGAT
CGGGTCCCGGTTCCGCTCCACCTGTAATACCACCGGAGTGGCTAATCAAG
TCCATACCACGTCCCTGCACCGCCTTGGTCCCTTGGCAGCCTTCGCCACT
GCAGATGCCGATGCCGATGCCGGAAGTCAAGATGGTGTCGCCCCAAATAG
TGGCACCCATGGCTGCGGCACCGGCGGTCCAGGAGCTGGATGACTACGAT
GACGATCTGGAGTTCTTCGAGAACAACAACACGTGCAGCGTGAATCTTAA
CAAGTCTGAGCAGGAGCACATGGACGAAGACCTGGCAAGCTTTCTAGACC
AT
FMO06431.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mst85C-RB | 1330 | CG11993-RB | 119..844 | 9..734 | 3630 | 100 | Plus |
| Mst85C-RA | 1352 | CG11993-RA | 141..866 | 9..734 | 3630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9051187..9051745 | 176..734 | 2795 | 100 | Plus |
| 3R | 32079331 | 3R | 9050961..9051127 | 9..175 | 835 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:49:37 has no hits.
FMO06431.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:05 Download gff for
FMO06431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst85C-RA | 131..870 | 1..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:55:37 Download gff for
FMO06431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst85C-RA | 128..867 | 1..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:28 Download gff for
FMO06431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst85C-RA | 131..870 | 1..740 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:28 Download gff for
FMO06431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9050951..9051127 | 1..175 | 97 | -> | Plus |
| 3R | 9051187..9051749 | 176..740 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:05 Download gff for
FMO06431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4876673..4876849 | 1..175 | 97 | -> | Plus |
| arm_3R | 4876909..4877471 | 176..740 | 99 | | Plus |
