FMO06433.5prime Sequence
1186 bp (1021 high quality bases) assembled on 2008-09-15
> FMO06433.5prime
CAGTCGACATGGAAAAGTTAATCACAATTTGCCTCCTCCTGAGGATTCTA
CAATCGTGTGCTATGCCCATTATTGACCCAGATAGTATAGACGAATCCCT
TGCGTGTCCACCGTGTGAGAATGACTTTCCCATCTGTTACAAAGTGATCG
TGGAGGTGGAACGGGGCAATGGACTGCCCGGTAGCTGTTGTCCTCGCTAC
GAGTGCCTCGATGAGGAACCTGTCTGCGATGGTTCCAAAAGGAGATTCTA
TAAGAACAAGTGCACTGTGTGCGATCCTTGCGAACCGCTGGCCATTCAGT
GCAAGGAAATATGTCCAATGGAAGAACCCGAACCCATTTGCCTGTCTGAC
AACAATGAGTACCACAGAAATGGCGATATTTGGATGGAAAACAATGGTTG
TACTACATGCATGTGCGAAGGTGGATATGTCACCCGCAATGCTGTTCAGT
GCAATCATTATTATCGGTGCAACAATCCCGTTGAGGTCAAGGGACAGTGC
TGTCCGGTTTGTCCGGACGAGCTGGGTGTGAGTAACAGTATCTATGACGA
TGGTAATCACAAGTATAGAAACACCACTTCAGCACCAATTTTGGGCGAAA
GCGAATCCTCCAGTTCAGGGTGGAGCTCCACTGTGCCAACAGATACTTCT
GATTCCGTTCCAGACACCAGCGGTTCACCCAATAGCTCATCTACATCATC
TGAACTGGCCACACCGACTCCGAACACAAGTGAATTATCCAGTTCCACAG
AGAGGACAAGTACGGATTCGAGTTATGAACAACTTGGAGAATTTGCCACT
TCCGAGTCGCCGGATCTCAGAACCGACTCAAAAGAACAAGAAACCTCAAG
TTCTGATTCTGCAATGGAGACTACCACAAATCCAACCACATTCGAAGCAC
AGCAACTTCACAGTTTCAAGCACTTCCATGGAACTTCCCACTGCAACAGA
TGATGGTATCACCAAATGGATTTTATTCCTGATGGCAGACACCGAAAGCA
CTGATGAGCCCACCGTGATCTTAATCATGCACCTAACTTTCTATATCCGT
GGTGGACGGATATTCCCATTCACGATTCAACGGGCCGGTCGTGGCCGCCG
AATCGACCAGTCAGATTATAGGATTCTCAACGATAGGAAATCACGCAATT
AGATATCCCTACGCAAGGTCTCCATGGAACGACACT
FMO06433.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd2-RA | 2245 | CG4786-RA | 410..1567 | 9..1165 | 5180 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20528697..20529756 | 1118..60 | 4615 | 97.7 | Minus |
| 3L | 28110227 | 3L | 20538898..20538949 | 60..9 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:05:32 has no hits.
FMO06433.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:31 Download gff for
FMO06433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd2-RA | 402..1429 | 1..1023 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:04 Download gff for
FMO06433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4786-RA | 399..1426 | 1..1023 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:55 Download gff for
FMO06433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd2-RA | 402..1429 | 1..1023 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:55 Download gff for
FMO06433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20528788..20529755 | 61..1023 | 99 | <- | Minus |
| 3L | 20538898..20538957 | 1..60 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:31 Download gff for
FMO06433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20521888..20522855 | 61..1023 | 99 | <- | Minus |
| arm_3L | 20531998..20532057 | 1..60 | 93 | | Minus |
