FMO06434.5prime Sequence
637 bp (636 high quality bases) assembled on 2008-09-15
> FMO06434.5prime
CAGTCGACATGTCGGCGACCTCCACGCGAAGTTCGGTGACGAGGAAATCA
TCGCTATCAAAAAGTTCTAGTTCAGACAAATCGGCAAAGTCCTCGTCGAA
TTCCTCGAAATCTCCGACAGCCGCCAGTGGAAACAAACAGAAAATGCAGT
ACACAAAAACCAGGGAGCGCATGGTCGATGATGTTCCACTTCCGCCCACC
CACAAGCTGACCATGTCGGAGGTATACGACGATCCGAAGACCGGAAAACC
CAACTTCGACGCCCTGCGCCAGCACTTTCTGCTGGAGGGGCGGATCGAGG
AGGCGGTGGCCCTGAGGATCATCACCGAAGGAGCCGCCCTGCTGCGCGAG
GAGAAGAACATGATCGACGTGGAGGCACCCATTACCGTGTGCGGTGACAT
CCACGGGCAGTTCTTCGATCTCGTAAAGCTCTTCGAAGTGGGCGGCCCGC
CGGCCACCACTAGGTACCTTTTTCTAGGCGACTACGTGGACAGGGGATAC
TTCAGTATTGAGTGCGTTCTCTACCTGTGGTCCCTGAAAATAACCTACCC
CACCACGCTTTCCCTGCTGCGAGGAAATCACGAGTGCAGGCATCTCACAG
AGTACTTTTACCTTCAAGCAGGAATGCATCATCAAGT
FMO06434.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CanA1-RD | 3064 | CG1455-RD | 765..1393 | 8..637 | 3125 | 99.8 | Plus |
| CanA1-RB | 2530 | CG1455-RB | 309..937 | 8..637 | 3125 | 99.8 | Plus |
| CanA1-RA | 2628 | CG1455-RA | 329..957 | 8..637 | 3125 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31041543..31041875 | 180..512 | 1665 | 100 | Plus |
| 3R | 32079331 | 3R | 31040138..31040310 | 8..180 | 865 | 100 | Plus |
| X | 23542271 | X | 16558702..16559068 | 637..270 | 605 | 78.3 | Minus |
| 3R | 32079331 | 3R | 31041962..31042076 | 511..626 | 530 | 99.1 | Plus |
| X | 23542271 | X | 16567301..16567667 | 637..270 | 470 | 75.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:08:14 has no hits.
FMO06434.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:33 Download gff for
FMO06434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanA1-RA | 322..957 | 1..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:55:27 Download gff for
FMO06434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanA1-RA | 320..955 | 1..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:47 Download gff for
FMO06434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanA1-RA | 322..957 | 1..637 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:47 Download gff for
FMO06434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31040131..31040310 | 1..180 | 97 | -> | Plus |
| 3R | 31041544..31041875 | 181..512 | 100 | -> | Plus |
| 3R | 31041964..31042076 | 513..626 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:33 Download gff for
FMO06434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26865853..26866032 | 1..180 | 97 | -> | Plus |
| arm_3R | 26867266..26867597 | 181..512 | 100 | -> | Plus |
| arm_3R | 26867686..26867798 | 513..626 | 99 | | Plus |
