FMO06436.5prime Sequence
1128 bp (944 high quality bases) assembled on 2008-09-15
> FMO06436.5prime
CAGTCGACATGGTGGGAAAGGGCTCGAGCGGCCTGGGCGGAGACACCAGT
ACGGGCAGTAAGGAACGCCCTGTTTTCATTCCGCCCCGGAAACGTCAACA
AACCAAATCGGAGGCCAAGAAGCAGAACTATGTGGATCACATCGTCAGTG
TGCAGCAAAATCGACCCAAGTTGTCGCCCTCCAATCCGGGACTTGAAGAG
GAGCTCCGCAAGTCCAAGCTGATCATCAAGAACAAGCAGCCGCTGCCGCA
GCTGCCGGGAGAGCTGGGTGTGCCCAGTGCCCACGACACCCTGGCTAGCA
CCCACTCGGCCAGCTCCACGCAGCACAGCCAGAAGTCAGCCAGATCGAAC
AGTAATCTCAACGAGCTGCAGAACTTCGAGTCCATATCGCAGGGCACCAA
GTCGACGTCGCAGCGGCACGAGAGCAGTACGGTGACGCCCAGCAGCTGTT
GCTATTCGGAGAGCAGCCTGGACGCCAAGTTGAGCAAGTCGCAGGACTGC
CTGAGCAACCGGTCGTCCTCCAAGAAGCGGGTCAACATCCGTACAAGCGA
TCTGCCCGGCCAGGGGCGCAATCAGCGCTCCTCACCGGAGATAGCCAACT
ACGAAGATCTGGAGTCCGGCGAAACGAGTGTGCTGAACAACTACGACCAG
AGTCTAGAGCGGGGCTATCAGGCGCGCAAGGAGGGCGGCGGCAACTACCT
GACCATGACGGGCACCTTTAAGCGGGGTCGCAAGAAGGGCCAGTCCGTGG
ACCTACAGATAAACATCAGTCGCGAGGAGCTGGAGCAGCTGAACGCCCAT
GCGATGGCCAGCGACACACAGAAAGGTGGCAATTTGTGCTGACCTGCAGC
TGTGGAACCGGCCTCCACCATCCTGCTCATCTCGCTCTTTTGCTGCCGTT
TGTGACCGTCGTTTCGCGGTATACTCCTTCTACATTGGAACGCTCACCTG
GTCATATGTTCAATTATTACTGCAAGAGAGACGTACCTGCCAGATCCGGG
TGAGCCGCTGCTGTCATGATCATCCGCTGGCATCAGGCTTGGCACCTTCG
ACTGGCCATCACTCGAATGGCGGCAGCTGAATCTGCTGCAGCATGGGTGA
AACAACTCACGAATCAGAGGAATCTCAC
FMO06436.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4596-RA | 2357 | CG4596-RA | 155..1247 | 9..1086 | 4820 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10873522..10874348 | 151..973 | 3800 | 98.7 | Plus |
| 3R | 32079331 | 3R | 10873192..10873338 | 9..155 | 735 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:41:10 has no hits.
FMO06436.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:02 Download gff for
FMO06436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4596-RA | 155..1151 | 9..997 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:55:28 Download gff for
FMO06436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4596-RA | 153..1149 | 9..997 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:51 Download gff for
FMO06436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4596-RA | 155..1151 | 9..997 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:51 Download gff for
FMO06436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10873192..10873338 | 9..155 | 100 | -> | Plus |
| 3R | 10873527..10874376 | 156..997 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:02 Download gff for
FMO06436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6698914..6699060 | 9..155 | 100 | -> | Plus |
| arm_3R | 6699249..6700098 | 156..997 | 98 | | Plus |
