FMO06438.5prime Sequence
1090 bp (949 high quality bases) assembled on 2008-09-15
> FMO06438.5prime
CCTATACGAAGTTATCAGTCGACATGTACTATCTGAACAACGAGCCAGCC
GCCCTTCCATCTCCCGCAAATCTCGCCCCACGGGATGTGCACTCATCCAC
ATTGGAGCTGAAGACGGTGTCTATAAATCCGGATGATACCTACACTGTTC
AGCAGGCGATCAATGCCTTCGGTTTCGGATGGTTTCACGTCAAGCTGTCG
CTCTTGGTGGGGCTCTGCTGGATGTCCGACTCCATGGAAATGGCCATTCT
CAGCATATTGGGCCCGTCTTTGTTCTGCGAGTGGAATGTCACCAAGTTCC
AGCAGGCATCCGTCACAACAGTGGTGTTTTTGGGCATGATGTTGAGTTCC
AGTTTTTGGACACAGCTGAGCAACAGATATGGCCGGAAGTCGGCCCTCAC
ATTGTTCGGAGTACTACTAGTGCTGTATAGCATTCTCAGCTCGGTGGCTC
CCAGTTACGCCTGGCTCCTGACCCTAAGAGGTCTCGTAGGCTTCGCCATC
GGCTGCGTTCCACAGTCAGTTACCTTGTACGCTGAGTTTCTGCCCACCAA
GCACAAGGGAAAGTGCGTCGTATTGATGGACTGCTTCTGGGCCTTGGGAG
CTTGCTTTGAAGTGGTCCTAGCACTGGTTGTGTATCCCTATTACGGATGG
CGAGGTCTCTTGGCCCTTTCGGCTACACCCCTACTCATTTTTACCATCCT
ATCGCCGTGGCTCAGTGAATCGGCTCGCTATTACTCTTACAACGGTCACA
ATGATAAGGCCATCAAAGTTCTGGAACAGATAGCTCACAACAACAAGCGC
CACATGCTGATGGGTCGGCTGATGGCGACGACAGCCTCGTTGCGCGGAGA
GCTTTAGATCCCTGCTCAGCCCGAGCCTGTACAGGACACATCCTGTGTGG
TTCTCTGGCTGGCCTCGCCTTTTGCTACTACGGCTGTGCTGTCACGACGA
GCTTCCTGGTGCCAGGAACAAGAAGCCATCCAATGATTGCCTACCTTCAT
GACCTTCGACTTTATTGACTGGCTGTGGATCACCCGGTCCAAATTTCCCT
GGATACTGCTGAACATCAGTGTGCTCAGCTGTTTGGGACA
FMO06438.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4324-RC | 1739 | CG4324-RC | 247..1325 | 24..1086 | 4650 | 96.6 | Plus |
| CG4324-RA | 1748 | CG4324-RA | 256..1334 | 24..1086 | 4650 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24016389..24016647 | 393..135 | 1295 | 100 | Minus |
| 2R | 25286936 | 2R | 24015902..24016027 | 707..582 | 630 | 100 | Minus |
| 2R | 25286936 | 2R | 24016210..24016335 | 517..392 | 630 | 100 | Minus |
| 2R | 25286936 | 2R | 24016704..24016815 | 135..24 | 560 | 100 | Minus |
| 2R | 25286936 | 2R | 24015412..24015717 | 1068..778 | 540 | 87.6 | Minus |
| 2R | 25286936 | 2R | 24015768..24015840 | 779..707 | 350 | 98.6 | Minus |
| 2R | 25286936 | 2R | 24016086..24016149 | 581..518 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:05:40 has no hits.
FMO06438.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:34 Download gff for
FMO06438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4324-RA | 246..1315 | 13..1068 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:55:48 Download gff for
FMO06438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4324-RA | 244..1313 | 13..1068 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:58 Download gff for
FMO06438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4324-RA | 246..1315 | 13..1068 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:58 Download gff for
FMO06438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24016704..24016825 | 13..135 | 95 | | Minus |
| 2R | 24015768..24015839 | 708..779 | 98 | <- | Minus |
| 2R | 24015902..24016027 | 582..707 | 100 | <- | Minus |
| 2R | 24016086..24016149 | 518..581 | 100 | <- | Minus |
| 2R | 24016210..24016334 | 393..517 | 100 | <- | Minus |
| 2R | 24016390..24016646 | 136..392 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:34 Download gff for
FMO06438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19903425..19903550 | 582..707 | 100 | <- | Minus |
| arm_2R | 19903609..19903672 | 518..581 | 100 | <- | Minus |
| arm_2R | 19903733..19903857 | 393..517 | 100 | <- | Minus |
| arm_2R | 19903291..19903362 | 708..779 | 98 | <- | Minus |
| arm_2R | 19903913..19904169 | 136..392 | 100 | <- | Minus |
| arm_2R | 19904227..19904348 | 13..135 | 95 | | Minus |
