FMO06439.5prime Sequence
398 bp (398 high quality bases) assembled on 2008-09-15
> FMO06439.5prime
CAGTCGACATGACGGAAGCAGCGGAAATCAACGGCAGAGAAGAAGTGGAG
GATGACGAGCAGGATAAAAAGCAAAAGAAATCCGATGTGAAACGACATGA
CGACGGCGCCGCAGATTTGGAACGTGTGACGGATTATGCCGAGGAAAAGG
AGATCTCTGCGGACAATATATCCAGCGCCGTGGAGCAGTTTGGCAACCAG
CGTAACAAGGAGAACGAACTGCGAGTAGCCAAAGAGAAGGAGCTCCAGAA
GGTCCAAGTCAAGAAGGAGGACATTGAACTGATTATGAACGAGCTGCTGG
TTAGCAAGGCGCATGCCGAGAAAGTGCTCCGCGAGCAGAGCGGCGATGTG
GTGGCCGCCTTGGAAGCCATCATCAGCAATGCAAGCTTTCTAGACCAT
FMO06439.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9922-RB | 1006 | CG9922-RB | 470..841 | 9..380 | 1860 | 100 | Plus |
| CG9922-RA | 626 | CG9922-RA | 90..461 | 9..380 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14035444..14035551 | 284..177 | 540 | 100 | Minus |
| 3R | 32079331 | 3R | 14035824..14035929 | 114..9 | 530 | 100 | Minus |
| 3R | 32079331 | 3R | 14035183..14035278 | 380..285 | 480 | 100 | Minus |
| 3R | 32079331 | 3R | 14035620..14035684 | 177..113 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:11:24 has no hits.
FMO06439.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:16 Download gff for
FMO06439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9922-RA | 81..461 | 1..380 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:55:50 Download gff for
FMO06439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9922-RA | 228..608 | 1..380 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:02 Download gff for
FMO06439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9922-RA | 81..461 | 1..380 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:02 Download gff for
FMO06439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14035183..14035278 | 285..380 | 100 | <- | Minus |
| 3R | 14035444..14035551 | 177..284 | 100 | <- | Minus |
| 3R | 14035621..14035682 | 115..176 | 100 | <- | Minus |
| 3R | 14035824..14035938 | 1..114 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:16 Download gff for
FMO06439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9860905..9861000 | 285..380 | 100 | <- | Minus |
| arm_3R | 9861166..9861273 | 177..284 | 100 | <- | Minus |
| arm_3R | 9861343..9861404 | 115..176 | 100 | <- | Minus |
| arm_3R | 9861546..9861660 | 1..114 | 96 | | Minus |
