FMO06445.5prime Sequence
1165 bp (974 high quality bases) assembled on 2008-09-15
> FMO06445.5prime
CAGTCGACATGAGCAAGTACCATAAGGAGCGCAAGTACGCCAAGTTCAGG
TACTACATGGAGAAGTACTACGTGCTGCCGCTGGAGCTGAAGAACGACAT
CATCTACTGCCAGCGATCGCTGCGCGATTTCCTCAAGGTTCACGCGTTGG
TCTCGGAGGTCTTCGATGAGCAGGCGGATGCGGATCCAGTGCAGATGCGT
CGCATCTTGGACGAACTGGAGGAGGAGGTGTACGAGATCAATGCCGAGCA
GCAGTTCCTTCTGCTACGCCTCAACGATAGCCTACAGGAATTCTCCGTGA
AGCTGAAGGAGAACAACATCATGTTCCTGCCGGACATCGCCCATGAGTAC
GTTTCCGCCCAGGTAGTGCCTTTGATCGTCGATCCCAACTATAAGATTAT
GCCACAGTCGGTGATGGCTCGTGATACCGAGGAGATGCTTATTCGCAAGC
ACTTCCTGCTGAGCCAGGACGATGATTCTGGTATGCCGCCGCTTAAGCTC
AGCGAATTGGATGAGAATATACCATTGATGCTGGCTCCGCCGGTTAGGGG
ATTGGGTCAGCAGATCGCCGCCGTTAAGCCGGAGCCAGAGTGGCTCCAAG
GCGATGAGGCGACAGTATCAGTGCCACCGCCGCCGCCACAATCGAAGTCG
AAGCTGATGAAAGGGTCGCTGGATTCGACCCCGGCCAAGCGAGAGAATAT
CAGCCGCAGCTCACCGCCGCCCTTGGCGCCTATAACCCAAACCGTAGTGG
CTGAGTTGTCACAAGTACCTCCATCACACAAGCAGAATCTCCACCAGTAA
ACTTTCACGTTGTGGCCCATAGTCGCAAGAACTTGCAGCAGGCATTGAAA
AGGGCCAGAAAGACGAAGCACCAGCCACGTTTGTTCGACGACAAGGAGGA
CCTGGAGATCCACCAGTTTGCAGACCGATCGCAACAGAACAGAACCGCGA
TGGCAAGGGGAACCGCCATCGCTGGAGCTACGAATGCTGCCCCATCAGCA
GCCAAGAAGACAATCCATAATGTTTAGTCAGGGGATTGCGAAAAATAATA
CGCGAAAGAGCAAAACACGTGCAGAAATCTCGCCAACGCCACATCATGAA
AGTCCACCAGCGTTACGTCTTCGCGGCACTCTCGTAGTATTCATGCGATC
TCACAAGACGCACAA
FMO06445.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lint-1-RE | 2412 | CG1908-RE | 392..1491 | 9..1095 | 4920 | 97.5 | Plus |
| Lint-1-RA | 2291 | CG1908-RA | 271..1370 | 9..1095 | 4920 | 97.5 | Plus |
| Lint-1-RD | 2535 | CG1908-RD | 688..1614 | 182..1095 | 4055 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11150635..11151527 | 182..1065 | 3735 | 96.9 | Plus |
| X | 23542271 | X | 11149714..11149851 | 9..146 | 690 | 100 | Plus |
| X | 23542271 | X | 11149924..11149961 | 146..183 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:16:34 has no hits.
FMO06445.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:32 Download gff for
FMO06445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lint-1-RA | 271..1382 | 9..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:55:58 Download gff for
FMO06445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1908-RA | 266..1377 | 9..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:18 Download gff for
FMO06445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lint-1-RA | 271..1382 | 9..1104 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:18 Download gff for
FMO06445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11149714..11149851 | 9..146 | 100 | -> | Plus |
| X | 11149925..11149960 | 147..182 | 100 | -> | Plus |
| X | 11150636..11151573 | 183..1104 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:32 Download gff for
FMO06445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11043747..11043884 | 9..146 | 100 | -> | Plus |
| arm_X | 11043958..11043993 | 147..182 | 100 | -> | Plus |
| arm_X | 11044669..11045606 | 183..1104 | 96 | | Plus |
