FMO06446.5prime Sequence
946 bp (946 high quality bases) assembled on 2008-09-15
> FMO06446.5prime
CAGTCGACATGGCTGTAAACGTCTACTCCACAAATGTGACGTCAGAGAAT
CTCTCGCGCCACGATATGCTAGCTTGGGTTAACGATTGCCTCCAGTCGCA
ATTCTCAAAAATCGAGGAGCTCTGCACAGGTGCAGCTTACTGTCAGTTCA
TGGACATGCTGTTTCCCAATTCAGTGCCAGTAAAGCGTGTCAAATTTCGT
ACCAATCTGGAGCACGAGTACATACAGAACTTCAAGATATTGCAGGCGGG
CTTCAAGAAGATGTCTGTGGATAAGATTATACCCATTGACAAATTAGTCA
AGGGTCGCTTCCAAGACAATTTCGAGTTTTTGCAATGGTTTAAAAAGTTC
TTCGATGCCAATTACGATGGCAGGGATTACGATGCCAGCGCGGTGCGCGA
GGGAGCCCCAATGGGCTTCGGATCGGGAGCGGTAAAGTCACTGCCCGGCA
CGGCGGCAAGCGGCGTGTCCAGCAGCTATCGACGTGGCCCATCGGCAACG
ACACGCCCAGCAATGACGTCTGCAGTGAAGCCCACAGTATCCAAGGTGCT
GCCGCGCACGAACAACGCAGCCCCAGCGAGCAGAATAAACGCCTGTGCCA
ACAGCACGGGCACGGTCAAGAAGAACGACGTGAGCAATTCGGTCAACAAT
CAACAAATAGAAGAGATGTCAAATCAGGTGATGGATATGCGCATAAACCT
GGAGGGATTGGAAAAGGAGCGAGACTTTTACTTCTCTAAGTTGCGGGATA
TTGAAATTCTTTGCCAAGAAGCCGATGACGCCGAGGCGCATCCGATCATA
CAAAAGATTTTGGACATCTTATATGCGACTGAGGATGGTTTTGCGCCGCC
TGACGATGCACCACCAGAGGACGAGGAGTTATGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGGCCAGGTAAGTGTTCATAATTCATAATCAT
FMO06446.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eb1-RG | 2043 | CG3265-RG | 101..973 | 7..879 | 4365 | 100 | Plus |
| Eb1-RA | 1873 | CG3265-RA | 194..1066 | 7..879 | 4365 | 100 | Plus |
| Eb1-RD | 1779 | CG3265-RD | 100..972 | 7..879 | 4365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 25202057..25202847 | 7..807 | 3210 | 94.3 | Plus |
| 2R | 25286936 | 2R | 6754178..6754438 | 274..534 | 1305 | 100 | Plus |
| 2R | 25286936 | 2R | 6752841..6752988 | 128..275 | 740 | 100 | Plus |
| 2R | 25286936 | 2R | 6754702..6754847 | 535..680 | 730 | 100 | Plus |
| 2R | 25286936 | 2R | 6752662..6752786 | 7..131 | 625 | 100 | Plus |
| 2R | 25286936 | 2R | 6754894..6754981 | 673..760 | 440 | 100 | Plus |
| 2R | 25286936 | 2R | 6755045..6755118 | 761..834 | 370 | 100 | Plus |
| 3L | 28110227 | 3L | 7767898..7768147 | 361..112 | 245 | 73.2 | Minus |
| 2R | 25286936 | 2R | 6755183..6755230 | 832..879 | 240 | 100 | Plus |
| 2R | 25286936 | 2R | 6753251..6753318 | 300..367 | 205 | 86.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:09 has no hits.
FMO06446.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:12 Download gff for
FMO06446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RD | 95..980 | 1..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:55:43 Download gff for
FMO06446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RD | 79..964 | 1..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:53 Download gff for
FMO06446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RD | 95..980 | 1..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:53 Download gff for
FMO06446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 25202052..25202852 | 1..814 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:12 Download gff for
FMO06446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3LHet | 687530..688330 | 1..814 | 93 | | Plus |
