FMO06447.5prime Sequence
1174 bp (986 high quality bases) assembled on 2008-09-15
> FMO06447.5prime
CTCTATACGAAGTTATCAGTCGACATGGGCAGCAGCGCCACGCAAACCAC
GGTGCCGTTCCGTGCAATTTGTTTATGTCTGCTGATCGCCAGCTGCTACG
TGTCGCTCTCCCAGGCAGATGAGCACAATCACAAGTACAATGACCGGGAG
GAGGTGGTACTGTGGATGAACACGGTGGGCCCGTACCACAATCGGCAGGA
GACGTACGCGTACTTCTCTCTCCCCTTTTGCAGTGGCCAGAAGTCCTCGA
TATCGCACTACCACGAGACGCTGAGCGAGGCGCTGCAAGGAGTCGAGCTA
GAGTTCAGTGGCTACGAGATGGAGTTCAAGAGCGACGCCCCCAAATCGGT
CATCTGCATGGTCACCTTGCAGGAGGAGAGCGCCAAGGCATTCACCTATG
CCGTGAAGAACGAGTACTGGTACCAGATGTACATCGATGGACTGCCCATT
TGGGGAAAAGTCGGTGAGCGCGACGAGCGCGATGGCAAGTACTATATCTT
CACGCACAAGAAGTTCGACATCGGCTACAATGGCCAGCAAATCGTGGATA
TCACCCTGACCACCGAGGGCCGCGAGGAACTCAAGCCGGGATCCCACATC
AACTTCTCCTACGAGGTCAACTGGAAGCCCAGCAAGGTGGAGTTCAAGAA
TCGATTCGACAAGTACCTGGATCCCAACTTCTTCCAGCACAGGATCCACT
GGTTCAGCATCTTCAACAGCTTTCATGATGGTCATCTTTCCTGGTGGGTC
TGGTGTCCATGATTCTGATGCGAACTCTGCGCAGGGATTATGCTCGGTAC
AGTAAGGACGAGGAAATCGACGACATGGAGCGAGATCTTGGTGATGAATA
CGGCTGGAAGCAGGTGCATGGCGATGTCTTCCCGTTCTCCGCCCAACAAC
ACTGCTCTTCTCGGCGGTGGTGGGCGCTGGAAACAACTGATTTCGGTTGA
TTCTGTGTGATCATGTTCGCCATAGTTTGGTGAATTGTACACGGACCGCG
GCTTCCATGCTGTCTACGGCTATTATTTGGTGAATGCCGCCTCTTCACTC
ATCAATGGATACTTTGGAAGATCGCTTCTATGCTCGCCTGGGTTGGACTG
CATGTGAGATTCCAAACGAAAGCTGGGTTCCCTTTAAAGTTTCATGTGAC
TGTGAGTGCGGCGACGGCCTTCTG
FMO06447.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10590-RA | 2653 | CG10590-RA | 182..1254 | 25..1106 | 4915 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5603072..5603631 | 693..134 | 2800 | 100 | Minus |
| 3L | 28110227 | 3L | 5602562..5602955 | 1093..693 | 1290 | 93.8 | Minus |
| 3L | 28110227 | 3L | 5603688..5603798 | 135..25 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:08:05 has no hits.
FMO06447.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:24 Download gff for
FMO06447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-RA | 175..1259 | 18..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:55:44 Download gff for
FMO06447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-RA | 171..1255 | 18..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:43 Download gff for
FMO06447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-RA | 175..1259 | 18..1113 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:43 Download gff for
FMO06447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5602546..5602954 | 694..1113 | 93 | <- | Minus |
| 3L | 5603072..5603629 | 136..693 | 100 | <- | Minus |
| 3L | 5603688..5603805 | 18..135 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:24 Download gff for
FMO06447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5595646..5596054 | 694..1113 | 93 | <- | Minus |
| arm_3L | 5596172..5596729 | 136..693 | 100 | <- | Minus |
| arm_3L | 5596788..5596905 | 18..135 | 97 | | Minus |
