FMO06448.5prime Sequence
1136 bp (1005 high quality bases) assembled on 2008-09-15
> FMO06448.5prime
CAGTCGACATGCCTTCGGAACAGCATACGAATATAAAAGTGGCGGTTCGC
GTACGGCCGTATAATGTCCGTGAATTGGAGCAAAAACAGCGGAGTATTAT
CAAGGTCATGGATCGTTCGGCACTGCTGTTCGATCCCGACGAGGAGGACG
ATGAGTTCTTCTTTCAGGGCGCCAAGCAACCGTACCGCGACATCACCAAG
CGGATGAACAAAAAGTTGACCATGGAATTCGACAGGGTATTCGATATAGA
CAATTCCAACCAGGATCTGTTCGAGGAGTGCACGGCGCCGCTGGTCGACG
CGGTGTTAAATGGATACAACTGCTCGGTATTTGTATATGGAGCCACTGGC
GCCGGAAAAACATTCACAATGCTGGGCAGCGAGGCTCATCCGGGTCTGAC
CTATCTTACCATGCAAGATCTCTTCGATAAGATCCAAGCGCAGAGCGACG
TGCGCAAGTTCGATGTGGGGGTATCCTATCTAGAGGTGTACAACGAACAT
GTGATGAATCTGCTAACTAAATCGGGCCCTTTAAAACTTCGCGAGGACAA
CAATGGCGTGGTGGTCAGTGGTCTTTGTCTCACGCCCATCTACAGTGCCG
AGGAGCTGCTAAGAATGCTGATGCTGGGCAACTCTCATCGCACTCAGCAC
CCCACAGATGCCAATGCAGAGAGTCCAGGTCACATGCCATCTTCCAGGTG
CACATTAGGATCACGGAGCGCAAGACCGACACCAAAAGAACGGTCAAACT
ATCCATGATCGATCTGGCGGGCAGTGAGAGGGCGGCAGTACGAAAAGGCA
TTGGAGTGCGATTCAAGGAAGGCGCCAGCATCAACAAAGTCTCTTAGCTT
TGGGAATTGCATAACAAGCTAAGCCGACGGCTTAAAGCACATCCCGTACC
GCGACTCGAACCTGACACGCATCCTTAAAGACTCGTTGGGCCGAAATTGT
CGCACATTGATGGTGGCCATGTCTCGATGAGCTCACTGACCTATGAAGAT
ACCTACAACACCCTTTAGTACGCTAGCCGAGCTAAGAAGATACGCCCGAT
TCTGAAACAGATGTCCTCAAGTCCAAAATGCCAACGAAGTTCTATGGTGA
AGAAAAATCGAACAGGTGGGAGCCGAGAACCGACAA
FMO06448.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Klp67A-RB | 2991 | CG10923-RB | 163..1287 | 9..1130 | 5175 | 97.9 | Plus |
| Klp67A-RC | 2994 | CG10923-RC | 258..1382 | 9..1130 | 5175 | 97.9 | Plus |
| Klp67A-RA | 2899 | CG10923-RA | 163..1287 | 9..1130 | 5175 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9365598..9366418 | 1130..313 | 3385 | 96.6 | Minus |
| 3L | 28110227 | 3L | 9366485..9366789 | 313..9 | 1525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:22:19 has no hits.
FMO06448.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:53 Download gff for
FMO06448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp67A-RA | 154..1268 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:55:45 Download gff for
FMO06448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp67A-RA | 143..1257 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:14 Download gff for
FMO06448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp67A-RA | 154..1268 | 1..1111 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:14 Download gff for
FMO06448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9365617..9366417 | 314..1111 | 97 | <- | Minus |
| 3L | 9366485..9366796 | 1..313 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:53 Download gff for
FMO06448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9358717..9359517 | 314..1111 | 97 | <- | Minus |
| arm_3L | 9359585..9359896 | 1..313 | 98 | | Minus |
