FMO06450.5prime Sequence
1154 bp (939 high quality bases) assembled on 2008-09-15
> FMO06450.5prime
CAGTCGACATGGCGCCCAAGGCAGCAGCTGTCAACATCAAGCCAACGGCC
AAGGCCTTCAAGGACAAGTCGAAGCCCACCGATGTGCGTTTGTCCAACAT
CCAGGCGGCCAAAGCCGTTTCCGATGCTATCCGCACCAGTTTGGGCCCCC
GCGGCATGGACAAGATGATCCAGGCCGGCAACGGCGAGGTGTCCATCACC
AACGATGGCGCCACCATCCTGAAGCAGATGAATGTACTGCACCCGGCTGC
CAAGATGCTGGTGGAGCTGTCGCGTGCCCAGGATGTGGCCGCTGGTGACG
GCACCACCTCCGTGGTTGTCATTGCCGGAGCTCTGCTTGAGGCGTGCGAG
AAGTTGCTGCAGAAGGGTCTGCATCCCACGGCCATTTCGGACTCGTTCCA
GCGCTGCTCGAACAAGGCCGTCGAGATTCTTAAACAGATGTCCACTCCCA
TCGAGCTGGACGACCGCGAGACGCTGATCAAGAGCGCCTCCACCTCGTTG
AACTCCAAGGTGGTGTCGCAGCAGAGCAGCCTGCTGGCCCCCATTGCCGT
GGATGCCGTGCTGAAGGTTACGGATCCCGGCAAGGAAACCTCTGTGGATC
TCAAGAACATCAAGGTCATCTCCAGCCTGGGTGGCACTGTTGAGGACACC
GAGCTGGTCGATGGATTGGTCTTCACCTGCCGCTCTGCCGGATCCAACGC
TCCCAAGCGCATTGAGAAGGCCAAGATCGGTCTTATCCAGTTCTGCATTT
CGGCCCCCCAAGACCGATATGGATCACATATGTGATTGTATCGGATTACG
CTGCCCATGGATCGTGTGCTCATGGAGGAGCGTTCATACATCCTGAACTT
TGTCAAGCAGATCAAGAAGTCAGGATGCAATGTTCTTCTCGTTCAAAAGT
CTATCTTGCGCGATGCTGTCTCTGATCTGGCTCAGCATTTCCCTGACAAG
ATCAAGTGCATGGTCGTTATGGATGTGGAGCCGCGAGGAATTGGATTTCG
TGTGCAAGACCTTGCACTGCCGACCGATCGCTTCGTTGGATCACTCACAG
GCCGAGAACTTTCCAGGTGCCGATCCTGGTCGAGGGAGGTGGCCGAGGGC
TACCACAGTTGTGGAGATCACCGCATCACAAACATTGAAGCACTGGCTCT
CAGA
FMO06450.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5525-RA | 1916 | CG5525-RA | 113..1223 | 9..1123 | 5025 | 97.5 | Plus |
| Tcp-1eta-RA | 1964 | CG8351-RA | 223..353 | 135..265 | 205 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12691574..12692219 | 758..113 | 3230 | 100 | Minus |
| 2L | 23513712 | 2L | 12691363..12691502 | 910..769 | 565 | 96.5 | Minus |
| 2L | 23513712 | 2L | 12692717..12692822 | 114..9 | 530 | 100 | Minus |
| 2L | 23513712 | 2L | 12691140..12691304 | 1075..910 | 510 | 88.6 | Minus |
| 3R | 32079331 | 3R | 8801964..8802094 | 135..265 | 205 | 77.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:20:48 has no hits.
FMO06450.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:56 Download gff for
FMO06450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5525-RA | 113..1211 | 9..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:56:03 Download gff for
FMO06450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5525-RA | 116..1214 | 9..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:57 Download gff for
FMO06450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5525-RA | 113..1211 | 9..1113 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:57 Download gff for
FMO06450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12691363..12691502 | 769..910 | 96 | <- | Minus |
| 2L | 12691565..12692217 | 115..768 | 99 | <- | Minus |
| 2L | 12692717..12692822 | 9..114 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:56 Download gff for
FMO06450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12691363..12691502 | 769..910 | 96 | <- | Minus |
| arm_2L | 12691565..12692217 | 115..768 | 99 | <- | Minus |
| arm_2L | 12692717..12692822 | 9..114 | 100 | | Minus |
