FMO06451.5prime Sequence
698 bp (698 high quality bases) assembled on 2008-09-15
> FMO06451.5prime
CAGTCGACATGGCCGATGAAGATATCACATTGAACGAGGATCAGCTCCTG
GAGTCATTGGAGGAGACGAACGGGGAGCAAGAGACTGAGATCGCCACAGA
GGTCGAGGAGGAGGGCAGCATGCAAATCGACCCGGAACTGGAGGCCATAA
AGGCTCGAGTTAAGGAGATGGAAGAGGAGGCCGAGAAGATAAAGCAGATG
CAGTCGGAGGTGGACAAACAAATGGCCGGTGGGTCTACCACCGGCTTGGC
CACAGTCCCGCTTTCTCTTGAGGAGAAGCAGGAAATCGACACGCGGTCCG
TCTACGTGGGCAATGTGGACTACGGCGCATCGGCCGAGGAACTGGAGGCC
CACTTCCACGGATGCGGCACAATCAACCGAGTAACCATACTCTGCAACAA
GGCTGACGGGCACCCCAAGGGATTCGCATACATTGAGTTTGGTTCCAAGG
AGTTTGTCGAGACGGCATTGGCCATGAACGAAACCCTCTTCCGGGGGCGT
CAAATAAAGGTAATGTCGAAGCGCACAAACCGCCCTGGACTCTCCACCAC
AAACCGTTTCGCACGCGGCAGCTTCCGGGGTCGAGGAGCCCGTGTCTCCC
GGGCGTGCTGTCACTCCACCTTCCGAGGCGCCCGAAGAGCTATGGGTTAC
CGTGGTCGCGCCAATTACTACGCTCCTTACGCAAGCTTTCTAGACCAT
FMO06451.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pabp2-RB | 1378 | CG2163-RB | 407..1078 | 9..680 | 3330 | 99.7 | Plus |
| Pabp2-RA | 1869 | CG2163-RA | 407..1078 | 9..680 | 3330 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8132388..8132793 | 106..511 | 2000 | 99.5 | Plus |
| 2R | 25286936 | 2R | 8132940..8133076 | 508..644 | 685 | 100 | Plus |
| 2R | 25286936 | 2R | 8132034..8132133 | 9..108 | 500 | 100 | Plus |
| 2R | 25286936 | 2R | 8133141..8133177 | 644..680 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:06:11 has no hits.
FMO06451.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:22 Download gff for
FMO06451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pabp2-RA | 402..1078 | 1..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:56:05 Download gff for
FMO06451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pabp2-RB | 420..1096 | 1..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:33 Download gff for
FMO06451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pabp2-RA | 402..1078 | 1..680 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:33 Download gff for
FMO06451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8132029..8132132 | 1..107 | 96 | -> | Plus |
| 2R | 8132390..8132791 | 108..509 | 99 | -> | Plus |
| 2R | 8132942..8133075 | 510..643 | 100 | -> | Plus |
| 2R | 8133141..8133177 | 644..680 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:22 Download gff for
FMO06451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4019895..4020296 | 108..509 | 99 | -> | Plus |
| arm_2R | 4020447..4020580 | 510..643 | 100 | -> | Plus |
| arm_2R | 4020646..4020682 | 644..680 | 100 | | Plus |
| arm_2R | 4019534..4019637 | 1..107 | 96 | -> | Plus |
