FMO06453.5prime Sequence
987 bp (-86 high quality bases) assembled on 2008-09-15
> FMO06453.5prime
CAATCCACTTGTTCAAGTTGCTGGTGCTCTCGTGCCTTTTGGCTTTGGCT
CTACCTTCGCTGGCGGAGGTTGGCTGGTGGAAGACGGGTCACTTCTACCA
TATCTATCCCAAATCTTTTAAGGATAGCGATGGCGACGGCGTGGGAGATC
TCATAGGTATTACGCAACAACTGCCTTACCTAAGGGAAATTGTCTTCCCA
GCCACCTGGCTTTCCCCGATCTTCACCTCACCCATGGCTGATTTCGGCTA
CTATGTGGCTGATCTTAAGGGTATTGATCCCATATTCAGAACAATGGAAG
ATTTCCAGGCCCTGCTTGATCGCGCCAAAGACCTGGACATCAAAATCATT
CTGGACTTTGGGCCCAACCACACCAGTGACGAGTGCCACTGGTTCAAACT
ATCGGCAGCTGGCGAAGAGGAATACAAGGATTTCTATGTTTGGCACACCG
GCAAGGTGGTCAAAGGAATCCGCCAGCCACCCACCAACTGGGTCTCCGTG
TTCCGCGGATCCATGTGGACCTGGAACGAGCAACGGCAGGCGTACTACCT
CCACCAATTCCACGCCAAACAGCCCGATCTAAACTACCGCAACCCCAAGG
TTGTTGAAGCCATGAACGATGTACTGCGCTTCTGGCTGCCAAAGGCGGCT
TACCGCTTCCGCATCCACGCCGTTCCTCATGTCTACTAAATTCCAGCTGA
TGCCGACGGCAACTGGCCCGATGAACCGCGGAGCGAGGCGGTGAGCGATC
CCTAGGACTACTCTTACCTGCATCACATCTACACCACCGATCAACCACAA
ACCCTGAAGCTGGTTACGCTGTCCGCGATGTGATCGAGAATACACGCCGA
GCTGGGTGGCGACGACGCGTCCTGCTCACGAGGCCTACTCTCCTCTGGAA
ATGTGATGCAGTACTATGAGAATGGCACTCACCTGTGCTCCCAGATCCCT
TCAATTCCAGCTGCTGGACAAGAACAGCTCAGCTCCG
FMO06453.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mal-A3-RA | 1795 | CG8695-RA | 38..1024 | 10..987 | 4015 | 94.3 | Plus |
| Mal-A5-RC | 1988 | CG30359-RC | 239..592 | 92..445 | 270 | 72.5 | Plus |
| Mal-A5-RA | 2045 | CG30359-RA | 239..592 | 92..445 | 270 | 72.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8456816..8457649 | 979..154 | 3145 | 93.8 | Minus |
| 2R | 25286936 | 2R | 8457707..8457855 | 158..10 | 700 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:05:46 has no hits.
FMO06453.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:38 Download gff for
FMO06453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A3-RA | 31..1024 | 1..987 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:56:07 Download gff for
FMO06453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LvpL-RA | 24..1017 | 1..987 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:02 Download gff for
FMO06453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A3-RA | 31..1024 | 1..987 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:02 Download gff for
FMO06453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8456807..8457646 | 157..987 | 93 | <- | Minus |
| 2R | 8457709..8457860 | 1..156 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:38 Download gff for
FMO06453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4344312..4345151 | 157..987 | 93 | <- | Minus |
| arm_2R | 4345214..4345365 | 1..156 | 94 | | Minus |
