FMO06454.5prime Sequence
720 bp (719 high quality bases) assembled on 2008-09-15
> FMO06454.5prime
CAGTCGACATGTCCGAGAGTAAGCAGCCAGTGCTTAGTAGAACTCAGACA
TCCGCCGACTACGGCAGCACGCTCCGGACGGATACGCCACGCCGACCCAC
ATTTATTCCGATCGAATCCCCGCGTCGCTATTCGAAAATGGCCCACGGTT
CCCTGTCCGGCCACGAGGCCGAGAATCGCCTCCAGAGACTGGAGTACTTC
CTTAACGTTCTCAACCAGATGTGCATTGGATTTATCACCATCTATATTTC
CTATCTCACGCTGCGAACGGGGCTCTCGGGCACGGGTCTGCATGCCTGGC
TAGTGACCATCGGGTTCTCCTTCTTCATGGCCGAGGGCGTCATGATCCAC
TACGGCGGCAATGTGCTGACAAATGGATACAAGCGTCAGACGAAGACCAC
CATTCACTGGGTGCTCCTGACTTTGGGAGGCGGTTGCGGGGCAGCTGGTG
CTCTTATCAAGATGATTCAAAAGGGGTTTTTGCTGCAATCGACACATGGG
AGGCTGGGGATGACCGCCTTCGTACTGTGCATTCTGGCCATGTCCTCGGG
ACTGGCTGCACTTTTCTCCAGCCGCATCAAGAAGCTAATCACACCATTGC
TGAACAAGACGTTCCACAACTTCCTGGGATTCGCGTGCTTTGTGATCGCA
CTGGTGACCCAGTACTATGGCTACCAGACGGGCTACTTTAAGAGCCGAAG
TGAGACGGATTTCCAAATCC
FMO06454.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13077-RA | 1146 | CG13077-RA | 274..985 | 9..720 | 3545 | 99.9 | Plus |
| CG13077-RB | 849 | CG13077-RB | 1..688 | 33..720 | 3425 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19566136..19566441 | 9..314 | 1530 | 100 | Plus |
| 2L | 23513712 | 2L | 19566985..19567198 | 507..720 | 1070 | 100 | Plus |
| 2L | 23513712 | 2L | 19566507..19566701 | 314..508 | 960 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:47 has no hits.
FMO06454.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:25 Download gff for
FMO06454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13077-RA | 270..985 | 1..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:56:09 Download gff for
FMO06454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13077-RA | 271..986 | 1..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:15 Download gff for
FMO06454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13077-RA | 270..985 | 1..720 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:15 Download gff for
FMO06454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19566986..19567198 | 508..720 | 100 | | Plus |
| 2L | 19566132..19566441 | 1..314 | 98 | -> | Plus |
| 2L | 19566508..19566700 | 315..507 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:25 Download gff for
FMO06454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19566132..19566441 | 1..314 | 98 | -> | Plus |
| arm_2L | 19566508..19566700 | 315..507 | 99 | -> | Plus |
| arm_2L | 19566986..19567198 | 508..720 | 100 | | Plus |
