FMO06455.5prime Sequence
961 bp (838 high quality bases) assembled on 2008-09-15
> FMO06455.5prime
CAGTCGACATGGCCGTCCTGCGTACTATGAAATTAAAGGAGCGACTGGTC
ATCAGTCTGGGTGCCACCCTCGTCCTGCTCACCCTTCTGCTTATCGTCGA
TGTGCAGATGGACTTCGGTGTGGCCAATCGCCACCTCCTTCAGCAACAGC
ACCAAAAGATCCGACTGGGCAACGACTACGATGGTGGCACGGGTGGCGGT
GGAATGCTGCACGAGTTCAAGCGCAAATTCCTGCAGAAGAGCAACGCCTC
GGGCTCCAAGGAGGCATCCACGCAGGCGGGGGCGAGCCAGAGTGGCGGGG
CGACCAGTGGTCAGGATGCGGCTGCCGGAGCTTCGGGCGGAGCAGCCGGA
CCCGGCACATCAAGGAGCACATCCACGAGGAAGCCCACACCACACGATCG
CTATGCGGATCTGCAAAAGCACCTGCTTAGCGATGAGTACTCGCATGTGA
TTGTGGACAATGCGCCGGATGTGAGCAGGGACAATCCCACGCTGGCCGAG
ATGCTGCACCGCAAGGCCAGTGCAAATGCCAGCAATTTGGAGCGCTTCCA
ATTGCGCATCACGAAGAAGGAGCTGTACGGCGAGCAAGACACTCTGGTGG
ATGCGGTGTTACGTGACATGATCAAGCTGCCAATACAGCATGTTGTGCAA
AAGGAGGGCGGCACCCAGCTGAAATTGATCATCGAGTACCCATACGATAT
CAAGGCCTTAATGAAGCCGATGCGGTTTTCCGCGGGAGCAGCAACGTTGC
CCAACCTCTTCTACTTCACGGACTATGAGCGCCACTACGCCGAGATTGCC
GCCTTTCCACCTGGACAGGATCCTGGGATTTCTGCGTGCCTTGCCCGTTG
CGGTCGTAGCTGAACATACGACCGAAATTTATCAACTGGGCGAGGAGATT
ATTGAGACTTTCTTTGTTTCCCCTCGCTGATTTATGCTTCCCTGGAAGTG
CTCGTACCTAT
FMO06455.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31145-RF | 3714 | CG31145-RF | 1027..1984 | 8..957 | 4345 | 97.6 | Plus |
| CG31145-RD | 3519 | CG31145-RD | 1837..2794 | 8..957 | 4345 | 97.6 | Plus |
| CG31145-RC | 4524 | CG31145-RC | 1837..2794 | 8..957 | 4345 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23622371..23622651 | 520..240 | 1405 | 100 | Minus |
| 3R | 32079331 | 3R | 23626597..23626830 | 241..8 | 1170 | 100 | Minus |
| 3R | 32079331 | 3R | 23616198..23616325 | 645..518 | 625 | 99.2 | Minus |
| 3R | 32079331 | 3R | 23615126..23615207 | 726..645 | 395 | 98.8 | Minus |
| 3R | 32079331 | 3R | 23614376..23614468 | 819..727 | 340 | 95.7 | Minus |
| 3R | 32079331 | 3R | 23611989..23612139 | 957..816 | 235 | 89.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:38:20 has no hits.
FMO06455.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:21 Download gff for
FMO06455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31145-RC | 1828..2797 | 1..961 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:21 Download gff for
FMO06455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31145-RC | 1825..2794 | 1..961 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:07 Download gff for
FMO06455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31145-RC | 1828..2797 | 1..961 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:07 Download gff for
FMO06455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23614377..23614469 | 725..818 | 94 | <- | Minus |
| 3R | 23615128..23615206 | 646..724 | 98 | <- | Minus |
| 3R | 23616198..23616322 | 521..645 | 99 | <- | Minus |
| 3R | 23622371..23622649 | 242..520 | 100 | <- | Minus |
| 3R | 23626597..23626833 | 1..241 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:21 Download gff for
FMO06455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19440099..19440191 | 725..818 | 94 | <- | Minus |
| arm_3R | 19440850..19440928 | 646..724 | 98 | <- | Minus |
| arm_3R | 19441920..19442044 | 521..645 | 99 | <- | Minus |
| arm_3R | 19448093..19448371 | 242..520 | 100 | <- | Minus |
| arm_3R | 19452319..19452555 | 1..241 | 98 | | Minus |
