FMO06457.5prime Sequence
1153 bp (1017 high quality bases) assembled on 2008-09-15
> FMO06457.5prime
CAGTCGACATGGACTACGAGAAGCTGGCGTTGAACGCGGGCGGAAGCGGC
AGCGGTGCCGAGCAGGACTTAGGCATGTGCGGTGGTCAGGAGCTGCTCGA
TGGCAGGGGCAAGGAGAAGGCGCGTCGCTACTGGACGCCCAGCGAGGAGG
AGCGCCTGTACGAGATCTGGGGACGCGACAACTGGCGCCTGACGCGCACC
GGCAAGAACACCATCTTCTTTGGCCGGTGGGCCGAGGAACTGCGCGACCG
GTTCGCCGTGGACGTGAAGCCCGAGGAGATCCAGATGAAGGTCAACCAGA
CCAGGGCCAAGTTCAGGCAAGTCAAAAAACAGCTGCAGGCGGATCCTTCG
AGCTATGCTACGCGCTGGAAGAAGTACGACATTATCAATCGCATCCTGAA
GAACCTGCACAGGCCCAAGAACGCCGATCCGCTGCCGCCAGAGGCGCTGC
TCAACAACCGCGACATGACACCGCCCCGGGATGATGCGTCCGCAGAGCAG
TTGCAGCAGCAGCCACAGCAGCAATCCGTTCAGCAGCAGCAGCAGCAAGG
CTTGGGACTGGCCAGTGAGCCAAGCACTGCCACCTATTACAATAGCAGCA
GCAATAGCAATCACGGCAGCAGCCACAACAACAACACCAGCGGCGGAGTT
AGCTTCAACACGGAGCTGTTTACGGACCAGTATGACGAGGTGGTCAAGCA
GGAGTACGAGGACGATGAGTACCGCTCCATTCCCTTTCAAGAGCAGTTGC
AACAGTATTCCCCAGCCGAGCCGGGCTCAGCTGCTCGAGCTGCAGACGCC
ACAGCAGCAGCAACAACTGCAGCAGCAGCAGCAACAACAGCAGCAGTTCC
AAACAAACTATGAGTCGCAATTTCAGCAGCAGCCGGCTCAATTCAATACA
ACAGCGTTATTAGCACTGCGGCCACATCGACCGTCAACCATCAGCCATAA
CGGCGGTAGCCTAATATCAATAGCAGCATTAACACATCAGCGTGCCACAA
ACGCAAACGGAAGCATGCAGCGCCGGTGCCGCCCAGTATCGCATCGTCGG
CTGCAGTCCAGATTTCGACACAACAACGCCGTCGTGGGCCCTCCCCGTTC
CTGTGCACAGAGCCGGCTGCTCATTCGGATCTGTAATCCCCACCGAACTC
GTG
FMO06457.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7239-RA | 1752 | CG7239-RA | 186..1335 | 9..1141 | 5035 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5802770..5803488 | 315..1030 | 3210 | 98.6 | Plus |
| 2L | 23513712 | 2L | 5802405..5802713 | 9..317 | 1545 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:06:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2889 | 496..1077 | 331 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6956 | 578..823 | 246 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6857 | 504..641 | 243 | 66.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..6915 | 494..660 | 238 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2836 | 452..984 | 237 | 54.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6897 | 494..660 | 235 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..7005 | 589..845 | 215 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2685 | 595..991 | 179 | 54.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2760..2832 | 572..644 | 176 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2676 | 590..901 | 165 | 53.4 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3219..3345 | 507..644 | 159 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2745..2989 | 384..636 | 140 | 56.7 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7942..7994 | 598..653 | 119 | 73.2 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9386..9438 | 598..653 | 119 | 73.2 | Plus |
| invader2 | 5124 | invader2 INVADER2 5124bp | 656..725 | 599..667 | 113 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1602 | 590..639 | 112 | 72 | Plus |
FMO06457.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:37 Download gff for
FMO06457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7239-RA | 180..1349 | 1..1151 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:56:13 Download gff for
FMO06457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7239-RA | 145..1314 | 1..1151 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:30 Download gff for
FMO06457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7239-RA | 180..1349 | 1..1151 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:30 Download gff for
FMO06457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5802399..5802712 | 1..316 | 99 | -> | Plus |
| 2L | 5802772..5803627 | 317..1151 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:37 Download gff for
FMO06457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5802399..5802712 | 1..316 | 99 | -> | Plus |
| arm_2L | 5802772..5803627 | 317..1151 | 95 | | Plus |
