FMO06458.5prime Sequence
1140 bp (995 high quality bases) assembled on 2008-09-15
> FMO06458.5prime
CAGTCGACATGCTGGTGCCGTCGGACATGATTGCGGCGCAGTCCAAGATG
GTCTACCAGATGAACAAGTACTGTGCGGACCGTGTCCAGGTGCGCAAGGC
GCAGATCCACAAGCAGATCCAGGAGGTGTGTCGCATCGTCCAGGACGTGC
TCAAGGAGGTGGAGGTGCAGGAGCCGCGCTTCATATCCGGTCTGAACGAC
TACAACGGTCGCTTCGAGGGCCTGGAGGTCATATCGCCCACGGAATTCGA
GATCATCATCTACCTGAATCAGATGGGCGTGCTCAACTTTGTGGACGATG
GCACCTTGCCGGGATGTGCCGTCCTGAAGCTGAGCGATGGAAGGAAGAGA
TCCATGTCCCTGTGGGTGGAGTTCATCACGGCCAGTGGGTATCTGTCCGC
CCGAAAGATCCGCTCCAGGTTCCAGACCCTGGTGGCCCAGGCCTGCGACA
AGTGCGCCTACCGCGACATTGTCAAGATGATCGCCGACACCACGGAGGTA
AAGCTGCGCATCCGGGAGCGCATCATTGTCCAGATTACGCCCGCCTTTAA
GTGCGCCGGCCTTTGGCCGAGATCCGCCTCCCACTGGCCGCTGCCGGGCA
TCCCATGGCCGCATCCCAACATCGTCGCCGAGGTGAAGACCGAGGGATTC
GACATGCTATCCAAGGAGTGCATCGCACTGCAGGGCAAGAACTCCGCCAT
GGAGGGCGACGCCTGGGTGCTCAGCTTCACCGACGCCGAAAACCGGCTGC
TGCAAGGAGCGAGTCGACGACGCTGCCTGAGCATTCTGAAGCCCTGCGTG
ATCGGCACCTGGACCTGCCCGGCAATCCGGTGACGTCGTAACCACCTGAA
GACCCTGCTGCTTCTACGATGCGAGAAGCATCCCGCGCGAGATGGAATGG
GAAGAGACTGCATCGCGGACCGGATCAATGGGATATCCTGCAGCTGATAT
CCTGCCTGCAGTGCCGCCGCTGTCGCACTACTTCCTGCCAATATTGATTT
TGTTCAAGGGCAAGTCGCCGGTGCCCTGAGAATGCCGCCAAGCAGGTTTG
GCGGCTCAACCCGGATCAATGCTGACATGTCGGTGGCTCTGGAGGGCTGG
CCAGCTTCTAGGACATTCGTTTGGGCGCCGGGTCAGTAGT
FMO06458.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:53:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mab-21-RA | 2082 | CG4746-RA | 360..1449 | 9..1095 | 4950 | 97.7 | Plus |
| CG4766-RA | 2673 | CG4766-RA | 728..1659 | 135..1053 | 1710 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:53:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6012074..6012822 | 757..9 | 3700 | 99.6 | Minus |
| X | 23542271 | X | 5998946..5999499 | 757..213 | 1145 | 80.9 | Minus |
| X | 23542271 | X | 6008852..6009159 | 1058..755 | 940 | 92.9 | Minus |
| X | 23542271 | X | 5998604..5998816 | 974..763 | 220 | 81 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:53:55 has no hits.
FMO06458.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:51 Download gff for
FMO06458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mab-21-RA | 358..1439 | 6..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:55:59 Download gff for
FMO06458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mab-21-RA | 355..1436 | 6..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:22 Download gff for
FMO06458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mab-21-RA | 358..1439 | 6..1084 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:22 Download gff for
FMO06458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6008841..6009157 | 757..1071 | 94 | <- | Minus |
| X | 6012075..6012824 | 6..756 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:51 Download gff for
FMO06458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5902874..5903190 | 757..1071 | 94 | <- | Minus |
| arm_X | 5906108..5906857 | 6..756 | 99 | | Minus |
