FMO06459.5prime Sequence
1064 bp (613 high quality bases) assembled on 2008-09-15
> FMO06459.5prime
CAGTCGACATGTCTGCCAGCGCCACCAACGGCACGCACTACGAGCAGCTG
CACCAAGGCCGCACCAAGATGTACAAGTCAAAGGTGGACGTCGTCCTGGG
AGCCCAGTGGGGCGACGAGGGCAAAGGCAAAGTGGTGGACATGCTGGCCT
CCGATGTGGACATCGTCTGCAGGTGTCAGGGCGGCAACAACGCTGGACAC
ACTGTGGTGGCTAATGGCACGGAGTTCGACTTCCATCTCCTGCCCAGTGG
AGTTGTGAACGAAAAATGCGTTTCCGTCATTGGCAATGGCGTCGTCATTC
ACCTGCCCTCGCTATTCGACAAGGTGCTGAAGAACGAAGCCAAGGGGCTG
CAGCACCTAGAGAACCGGCTGATCATCTCGGATCGTGCCCACCTGGTTTT
CGACTTCCATCAGCATGTGGATGGCATGCAGGAGGCTGACAAGGGCGGCA
AGTCGCTCGGCACCACCAAAAAGGGCATCGGTCCGGCATACTCCAGCAAG
GCTACCCGCAATGGCATCCGAGTGGGCGAGCTGCTCGGCGACTTCAATCT
ATTCAGCGAAAAGTTCAAGTCGATTGTGGCCACGCACGTGCGCCTGTTCC
CATCGATTAACGTCCACGTAGAGGCCGAGCTGGACCGCTACAAGGACTAC
GCGGATAAGGTTCGTCCCTATGTCAAGGACACCATTTGCTTCCTGCACAC
TGCCCTGCGCAACGGCTAGACGATCTTGATCGAAGGCGCCAACGCGGCCA
TGCTGGACATCGACTTCGGCACGTATCCGTATGTGACGAGCAGCAACTGC
AGCATTTGCGGTGTTCTCACGGGCCTGGGTCTGCCCTCCGCAGACGATTG
GCGAGGTGATTGGCGTGGTCAAGCCTATACGACGCGAGTGGGCGATCGTC
CATGCCCACCGAGCAGCTAAATGAATTGGCGACTGCTGCTACGCGCGGCT
TTGAAGTCGTGTCCTACTAGCAGAGCAGCGCTGCGTCTGCTGTACATACC
GCTGCTGAGTATACTTCCTGTTCTACGCTAACGTTGATCTGTCTGAACGA
GCTGAAATTCTCAA
FMO06459.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AdSS-RA | 1951 | CG17273-RA | 135..1202 | 9..1062 | 4510 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20825632..20825993 | 923..563 | 1545 | 97 | Minus |
| 3R | 32079331 | 3R | 20826062..20826344 | 564..282 | 1355 | 98.6 | Minus |
| 3R | 32079331 | 3R | 20830275..20830446 | 180..9 | 860 | 100 | Minus |
| 3R | 32079331 | 3R | 20827979..20828085 | 283..177 | 520 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:44:26 has no hits.
FMO06459.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:27 Download gff for
FMO06459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17273-RA | 128..1160 | 1..1023 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:56:00 Download gff for
FMO06459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17273-RA | 163..1195 | 1..1023 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:32 Download gff for
FMO06459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AdSS-RA | 128..1160 | 1..1023 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:32 Download gff for
FMO06459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20830276..20830453 | 1..179 | 97 | | Minus |
| 3R | 20827980..20828082 | 180..282 | 99 | <- | Minus |
| 3R | 20825633..20825993 | 563..922 | 96 | <- | Minus |
| 3R | 20826064..20826343 | 283..562 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:27 Download gff for
FMO06459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16653702..16653804 | 180..282 | 99 | <- | Minus |
| arm_3R | 16651355..16651715 | 563..922 | 96 | <- | Minus |
| arm_3R | 16651786..16652065 | 283..562 | 98 | <- | Minus |
| arm_3R | 16655998..16656175 | 1..179 | 97 | | Minus |
