FMO06460.5prime Sequence
1161 bp (1028 high quality bases) assembled on 2008-09-15
> FMO06460.5prime
CAGTCGACATGGGCGTCAAGGAATTATGGGGTGTTTTAACGCCCCATTGT
GAACGTAAACCCATTAATGAACTGCGGGGAAAGAAAGTGGCCATCGACCT
GGCCGGCTGGGTGTGCGAATCTCTTAATGTTGTGGACTACTTTGTGCATC
CAAGGCATCATTTAAAGAACCTCTTCTTTCGCACTTGCTACTTGATTTGG
GAGCAAGTTACTCCGGTTTTCGTTTTGGAGGGAGTTGCTCCAAAACTCAA
GAGCCAGGTGATAGCCAAAAGGAATGAGCTCCAGTTTCGGGGAGTGAAGC
CCAAGAATTCGCCTGAGTGCACCCAAAGTCAGCCGTCCAAGGGCGACAAG
GGACGCAGCCGGTTCAACCATGTTCTCAAGCAGTGCGAAACGCTGCTGCT
CTCCATGGGAATCCAGTGCGTCCAAGGTCCCGGCGAGGCGGAGGCCTACT
GTGCCTTTCTCAACAAGCATGGCCTAGTGGACGGCGTCATTAGCCAGGAC
TCGGATTGCTTTGCCTATGGAGCCGTTCGTGTCTATCGCAACTTCTCCGT
TTCCACCCAAGGAGCCCAGGCAGCCGCCGGCGGAGCTGTGGACATCTACG
ACATGCGGGAGATCACATCCCGAATGGACTTTGGCCAACAGAAGATCATT
GTGATGGCTTTGCTCTGCGGCTGTGATTATTGTCCTGATGGCATAGGTGG
CATTGGCAAGGATGGCGTCCTAAAGCTGTTCAACAAGTACAAGGAGACTG
AGATTTTGGATAGAATGAGAAGCTGGCGTGGTGAAACCGATAAATACAAT
GCCTTGGAGATCCGAGTGGACGACAAATCCATCTGCAGCAATTGTGGCCA
CATTGGCAAGACCCAGAGCCACACAAAAAAGTGGCTGCAGTGTGTGTCGC
ACACACAAAGGCTGCGATGAGAGTCTCTGGAAAGACAACGACTATCCATT
AAGTCCGAGTTGACTTTGAGGCGGAAAGCCCTATTATTCTCTGACTTTCC
AAACGAAGAAGATTCATTGCCGAGTTTCTCAGCGAACCCGGACACCATTT
CCAATCTAAATCTCGACTGGCGCACCCAAATCTTGGTCAATTCATCAACA
ATCGGGACCTCTCTTGGCATGGCCAGAAAATAACGTGCTTTCAAAGTTCT
TTCCATAACTC
FMO06460.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gen-RA | 2273 | CG10670-RA | 76..1220 | 9..1154 | 5210 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5151770..5152076 | 473..167 | 1535 | 100 | Minus |
3L | 28110227 | 3L | 5151415..5151704 | 763..474 | 1450 | 100 | Minus |
3L | 28110227 | 3L | 5151179..5151348 | 932..762 | 805 | 99.4 | Minus |
3L | 28110227 | 3L | 5152143..5152301 | 167..9 | 795 | 100 | Minus |
3L | 28110227 | 3L | 5150927..5151120 | 1129..935 | 485 | 87.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:52:40 has no hits.
FMO06460.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:38 Download gff for
FMO06460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gen-RA | 76..1227 | 9..1161 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:56:02 Download gff for
FMO06460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gen-RA | 47..1198 | 9..1161 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:43:05 Download gff for
FMO06460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gen-RA | 76..1227 | 9..1161 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:43:05 Download gff for
FMO06460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5151179..5151346 | 764..932 | 99 | <- | Minus |
3L | 5151415..5151704 | 474..763 | 100 | <- | Minus |
3L | 5151770..5152076 | 167..473 | 100 | <- | Minus |
3L | 5152144..5152301 | 9..166 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:38 Download gff for
FMO06460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5144279..5144446 | 764..932 | 99 | <- | Minus |
arm_3L | 5144515..5144804 | 474..763 | 100 | <- | Minus |
arm_3L | 5144870..5145176 | 167..473 | 100 | <- | Minus |
arm_3L | 5145244..5145401 | 9..166 | 100 | | Minus |