FMO06461.5prime Sequence
1092 bp (937 high quality bases) assembled on 2008-09-15
> FMO06461.5prime
CAGTCGACATGACAACCTCAAGTCTTGCAATCGGCGCATCCGTAGCGCTT
ATTCTGTTGATGTTGACTGGTTCAGGGCATTGCCAAGTGGGATACGTGCG
GCACCTGTCGGAGCTGCGGATAAGGGAACTTGAAAAATTGTCGGTTCGTA
TACAGGGCTCCATCAACACCGAAAAGTATGCCTGCGAGAGCTATTTCGAC
TACGTCTGTAGCCGCAATCGACCCCTCTTTTCGATCATGGGACACATGCC
GCAAATGGGCGATCTTATGCAGTTGCTGACCGAGCTGCAGAACGATCCAG
AGCCATTCGAGGCTAAGCAGAAGACGCTGGACTTCTTCATCTCCTGCAAC
GTGCACCACGCGCTGGAAGACTGCTATCGTGAGACCTATGAGTATTTCAA
GCCACTTTTCGGGTATATAGTTACAAAAAACATGCTCAATGGAGAATCCC
ACGAGCTGGATGACTTTCTGGGCATTTTGGACCGCTTCGTCGTCAGGTTT
CAGAAGGACAGAGAGTCGAATCCCATTCTCAGCAAGCTGGCCACGTATAA
GCAGAAATTTAAAACGCCGCGAGTCTACTTCCATGCTAGAGACCTGAGCC
GGGAGTACAAGGACCTGCGGATCTACCGGGGAGAGCTACGAACACAACGT
TCGCAATCTGGAGCAGCACAGAAAACTGAATTCAACATACGAATTGGGGG
TTCAGCGCACCATGCTGGATTGGAGCATGTACCTCTTTCAGAGCCGCAAC
AAGCCCATGTCCTACTTCTACTCCACGTTTACGGTCCATTTGTACATGAT
GCTTTTTAATAGTCTGGAGCGTCAGCGTGATTTCACGCGGTTCGCGAAGA
TGTGGAGTGTTTACGCTGCCGCAGTTCGTAATGTTCTGGATGAGGCAGAA
TGCTGGCTGTGATCTACTTAAGAGCTTCCGAGCGCCTGGATAGACTACAG
GCGCCTGGATCAACTCGCCTCACAGAAGTGGGATATACGATCAGGAAAAT
GGCGTCTTCAAAGTTACATCTTGACACAGCGTATATTTTTTACTCTTTAC
CCCGAACTTCTGGGAGTTGGGAAGATCTGCGACTTCTTCTAT
FMO06461.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1092-RD | 1310 | CG1092-RD | 23..1108 | 9..1079 | 4900 | 97.8 | Plus |
| CG1092-RC | 1492 | CG1092-RC | 205..1290 | 9..1079 | 4900 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4267260..4268081 | 240..1050 | 3385 | 97.5 | Plus |
| 3R | 32079331 | 3R | 4266974..4267206 | 9..241 | 1165 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:07:48 has no hits.
FMO06461.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:14 Download gff for
FMO06461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1092-RC | 200..1284 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:20 Download gff for
FMO06461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1092-RA | 16..1100 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:35 Download gff for
FMO06461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1092-RC | 200..1284 | 1..1074 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:35 Download gff for
FMO06461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4266969..4267205 | 1..240 | 98 | -> | Plus |
| 3R | 4267261..4268094 | 241..1062 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:14 Download gff for
FMO06461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 92691..92927 | 1..240 | 98 | -> | Plus |
| arm_3R | 92983..93816 | 241..1062 | 97 | -> | Plus |
