FMO06462.5prime Sequence
1161 bp (1031 high quality bases) assembled on 2008-09-15
> FMO06462.5prime
CAGTCGACATGGCACCAATGCCCCGAATTCAGTTACCCAATGGAAATTCT
TCCATAAAGGCTAGCACAAATGATTTTCTCTTTGCGGAAACAATGTCCGG
CGGCAGTAGTCCCACCCCCAGCAGTCCGCCATCCAGTACAGCAGGCGTTG
CCAAATCTCAGTGTTCTTCCCTTTCGGATGGCGAATCCTTTGAGGGATAT
GGCGAAAATGAGTATCCCACCCAACTTCGCGAAGCCCGCAGCTCCAATTC
CAATGGGAGCCATAATATGAGCAATCATATTAACAATAATTCTAATATCA
GCGTGGGCAACAACAGTGGACACAACCACAGTGGACACTCGAACGATGGA
AATAACAACCTAAATGGCAGCACTGGCGTCGAACTCGATTTGGCTCCACA
CGTCGGCTCATCAACACCTCAAGATGATGACGAACTAAACATAATGCCCC
GGGATAATTGGGCCAGGCGCAGTCTGCGACGAACTCCCACCAGTTCCGGC
CGCAGGCAAATTAGTTCAAATGCCTTAGCCAGCCAACTCTATAGATCATC
GAGCTTTAACTCATCGGGCCGTAGCTCCAACTGTGATACAACAGAAGACA
TGTACAGCGACATAAGCTTGGAGAATCGTCATGACTACGATTATAGGCTG
GAACTGCTGCAGCGCAAGGTGGACGATCTGTCAGATACACAGAATATAGC
TGAGGATCGGACAACCCGCACCAAGACCGAATATGCAGTCCTTCAGGCGC
GTTATCACATGCTCGAAGAGCAGTACCGAGAGTCGGAACTGCGTGCCGAG
GAGCGTTTGGCAGAGGAGCAGAAGCGGCACCGCGAGATTTTGGCCCGCGT
GGAGCGTGAAGCCTCGCTGCAGAACGAGAACTGCCAGATGAAGATCCGTG
CCACCGAGATCGAGGCAACGGCACTGCGGGAAGAAGCCGCCCGACTGCGT
GTCCTGGGTGACAAGCAGGCCATGACCTCATCGCACCGAGGAACAGTTGG
AGCTGGCGCGGCGACCAAATCGGCGTCCTGCAACAGGAGCACGAGGAACA
GGCACAGGCACTGCGCCGCCACGAACAGGAAAAGAAGCCACCGAAGACTG
ATGCCTGAACTGGCCGGACCGCACGCTGCTCCGAGAGAAGTGGACCCGGC
CATGCCCAACC
FMO06462.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nuf-RL | 2735 | CG33991-RL | 741..1841 | 7..1104 | 5310 | 99.1 | Plus |
| nuf-RA | 2696 | CG33991-RA | 741..1841 | 7..1104 | 5310 | 99.1 | Plus |
| nuf-RC | 3446 | CG33991-RC | 741..1841 | 7..1104 | 5310 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14200162..14200447 | 139..424 | 1430 | 100 | Plus |
| 3L | 28110227 | 3L | 14230654..14230961 | 781..1087 | 1350 | 98.1 | Plus |
| 3L | 28110227 | 3L | 14230175..14230310 | 647..782 | 680 | 100 | Plus |
| 3L | 28110227 | 3L | 14199966..14200100 | 7..141 | 660 | 99.3 | Plus |
| 3L | 28110227 | 3L | 14213087..14213203 | 531..647 | 585 | 100 | Plus |
| 3L | 28110227 | 3L | 14200739..14200807 | 425..493 | 345 | 100 | Plus |
| 3L | 28110227 | 3L | 14212191..14212232 | 491..532 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:12:00 has no hits.
FMO06462.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:31 Download gff for
FMO06462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RC | 735..1843 | 1..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:19 Download gff for
FMO06462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RA | 731..1839 | 1..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:21 Download gff for
FMO06462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RC | 735..1843 | 1..1107 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:21 Download gff for
FMO06462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14199960..14200100 | 1..141 | 96 | -> | Plus |
| 3L | 14200165..14200447 | 142..424 | 100 | -> | Plus |
| 3L | 14200739..14200807 | 425..493 | 100 | -> | Plus |
| 3L | 14212194..14212232 | 494..532 | 100 | -> | Plus |
| 3L | 14213089..14213203 | 533..647 | 100 | -> | Plus |
| 3L | 14230176..14230310 | 648..782 | 100 | -> | Plus |
| 3L | 14230656..14230994 | 783..1117 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:31 Download gff for
FMO06462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14193839..14193907 | 425..493 | 100 | -> | Plus |
| arm_3L | 14205294..14205332 | 494..532 | 100 | -> | Plus |
| arm_3L | 14206189..14206303 | 533..647 | 100 | -> | Plus |
| arm_3L | 14193060..14193200 | 1..141 | 96 | -> | Plus |
| arm_3L | 14193265..14193547 | 142..424 | 100 | -> | Plus |
| arm_3L | 14223276..14223410 | 648..782 | 100 | -> | Plus |
| arm_3L | 14223756..14224094 | 783..1117 | 96 | -> | Plus |
